GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000894-TA|BGIBMGA000894-PA|IPR000308|14-3-3 protein,
IPR010989|t-snare, IPR009054|DNA topoisomerases I, dispensable insert,
eukaryotic-type, IPR009053|Prefoldin
         (1630 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              33   0.019
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              33   0.019
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   1.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    26   2.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   3.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   5.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   6.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   6.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   8.8  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 33.1 bits (72), Expect = 0.019
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 474 DVNEIAKVQEQLKQELNDEIKDVNVKDLIEKLKSAEEQI-TQLN--DEIDAANKNMIKVK 530
           DV EI K +  + Q+  D+I +VN     EK +   E I  Q N  DE     +N+++  
Sbjct: 28  DVQEICKTESGIDQQTVDDINEVNFDVEDEKPQRYNECILKQFNIVDESGNFKENIVQEL 87

Query: 531 SNHKLKLKQMQKTIDNFSKVSDSN 554
           ++  L    ++K +   S +SD+N
Sbjct: 88  TSIYLDENVIKKLVAECSVISDAN 111


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 33.1 bits (72), Expect = 0.019
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 474 DVNEIAKVQEQLKQELNDEIKDVNVKDLIEKLKSAEEQI-TQLN--DEIDAANKNMIKVK 530
           DV EI K +  + Q+  D+I +VN     EK +   E I  Q N  DE     +N+++  
Sbjct: 28  DVQEICKAESGIDQQTVDDINEVNFDVEDEKPQRYNECILKQFNIVDESGNFKENIVQEL 87

Query: 531 SNHKLKLKQMQKTIDNFSKVSDSN 554
           ++  L    ++K +   S +SD+N
Sbjct: 88  TSIYLDENVIKKLVAECSVISDAN 111


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
            beta-3 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 1219 ELRSSISSAVDQRGFEIAELWKQHLAQREADFQKTEHELRVQLSAFES-KYEQLLDSVQS 1277
            E RS+   AV  R    +E++   L+  E  F++    L  ++    +  + +   +  S
Sbjct: 700  EYRSNSMGAVMTRN---SEMFSSLLSDTEQHFRQHRDSLSPRVENRSAIVHSEASANANS 756

Query: 1278 STQEETNKIVTMEQVTSLQNKLQDKEEHLRNLQEKYA 1314
            ST  E ++    +  TSL+ + ++K EH    +E YA
Sbjct: 757  STSSEESR--EEKATTSLEAEKREKSEHCEKGKEYYA 791


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
            protein.
          Length = 459

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 1179 ETLNTELTGHDVVNQEQINQLKSKLEQLNTENDNLLSTVAE 1219
            + L TE   +++V  + +NQLK     ++T+N  L   +++
Sbjct: 409  DLLTTEKDNNEIVTAQFLNQLKKSSVLVHTKNGRLKYQISD 449


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 1165 NTELQECYTKIIQLETLNTELTGHDVVNQEQINQLKSKLEQLNT-ENDNLLSTVAEL 1220
            +T++Q C +  I+ ETL+T +   D ++ +     ++ +   N  ++DN++    EL
Sbjct: 320  STDIQNCDSVKIKFETLHT-MDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPEL 375


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 1170 ECYTKIIQLETLNT---ELTGHDVVNQEQINQLKSKLEQLNTENDNLLSTVAELRSSISS 1226
            E  T+ IQ ET      E+  HD   +EQ+     K E  +T      +    L   +S 
Sbjct: 138  EIKTESIQPETTKVDTREVQPHDASEKEQLGLASVKAEPGSTGTTTTSTGTRLLHGILSQ 197

Query: 1227 AVDQRGFEIAELWKQHL 1243
               Q G  +   + +HL
Sbjct: 198  HPQQHGLGVQNGYGRHL 214


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 23/138 (16%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 853 KKNQILLEENQNLQISLSDMQQHYNALVEKANRTDLAESESTKYQTQLRDLESNLKRITH 912
           K N ILL    +L+++  ++  H N +     +  +   ++++  + LR L+  +  I  
Sbjct: 247 KLNDILLTVRPHLELTFENILSHINTVYVLRTKKGVMRVDASEEYSYLR-LKGQMLYIPE 305

Query: 913 EHQT--LIVQKKKEIEDLEIE----FNTQIESAIRDKKVLNEKYEKNIEYVTQLEAQLQE 966
                 L       ++DL        +  +  A RD  +++E++E + +    LE    +
Sbjct: 306 SDLVTFLCYPSVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTRNLELLTDK 365

Query: 967 YKNNIENLNMNVEELNKM 984
            +     L+   ++ +++
Sbjct: 366 LQQTYRELDGEKQKTDRL 383


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 23/138 (16%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 853 KKNQILLEENQNLQISLSDMQQHYNALVEKANRTDLAESESTKYQTQLRDLESNLKRITH 912
           K N ILL    +L+++  ++  H N +     +  +   ++++  + LR L+  +  I  
Sbjct: 247 KLNDILLTVRPHLELTFENILSHINTVYVLRTKKGVMRVDASEEYSYLR-LKGQMLYIPE 305

Query: 913 EHQT--LIVQKKKEIEDLEIE----FNTQIESAIRDKKVLNEKYEKNIEYVTQLEAQLQE 966
                 L       ++DL        +  +  A RD  +++E++E + +    LE    +
Sbjct: 306 SDLVTFLCYPSVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTRNLELLTDK 365

Query: 967 YKNNIENLNMNVEELNKM 984
            +     L+   ++ +++
Sbjct: 366 LQQTYRELDGEKQKTDRL 383


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 322 TELTKKIELLEHLNCQIRQTNKELENKLAT 351
           T ++   EL  H+NC   +  ++L NKL T
Sbjct: 53  TLISSHDELPGHINCDSSKFEEDLMNKLPT 82


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.124    0.316 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,733
Number of Sequences: 429
Number of extensions: 15283
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 12
length of query: 1630
length of database: 140,377
effective HSP length: 67
effective length of query: 1563
effective length of database: 111,634
effective search space: 174483942
effective search space used: 174483942
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 50 (24.2 bits)