Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000893-TA|BGIBMGA000893-PA|IPR008734|Phosphorylase
kinase alphabeta
         (631 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   7.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   7.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 127 GRSPSPEEAKKKVFT--KGTSTTNLGVAPPTIEITKDQTTSPPKEVVNKSPPVLRNRTVS 184
           G   SP  A +K  +   G+  +  G A      + +QT+S  +E  + +  +   +  +
Sbjct: 579 GGKTSPNSAVRKCMSPINGSGASGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPT 638

Query: 185 ESQSVVYAEQETDELLAMLRETE 207
            ++S++    E  E L ML+  E
Sbjct: 639 LTESLLNRHNEDMEKLMMLKHRE 661


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 120 EVDPTHAGRSPSPEEAKKKVFTKGTSTTNLGVAPPTIEITKDQT 163
           ++D  H G +     A++K   +       G A PT+  T+ +T
Sbjct: 194 DLDMNHPGFADKEYRARRKFIAEIAFAYRYGDAIPTVPYTETET 237


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 6/33 (18%)

Query: 495 LKFALAVETVLN------SIPQPEYRQLVVEAL 521
           L  A+AVE   N      S+PQ EY Q + EA+
Sbjct: 16  LMMAIAVELPNNWRICDRSLPQKEYNQCIAEAV 48


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,468
Number of Sequences: 429
Number of extensions: 6339
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 631
length of database: 140,377
effective HSP length: 62
effective length of query: 569
effective length of database: 113,779
effective search space: 64740251
effective search space used: 64740251
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)