GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000893-TA|BGIBMGA000893-PA|IPR008734|Phosphorylase
kinase alphabeta
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    32   0.21 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.64 
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    30   0.85 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   2.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   2.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    28   3.4  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   4.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   6.0  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   6.0  

>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 152 APPTIEITKDQTTSPPKEVVNKSPPVLRNRTVSE--SQSVVYAEQETDELLAMLRETESL 209
           APP++++T  Q   P  E V +S   LR   V E  SQS  Y+ +  +E+L M  +  +L
Sbjct: 5   APPSVDLTSIQWRMP--EWV-QSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNAL 61

Query: 210 DEQGDILQYLVDTHGLDF 227
           D  GD+   L    G+ F
Sbjct: 62  D-LGDLNSQLKRLTGIQF 78


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 78   LRRRMSVRGAIKKTRSINVDSDTLGMEGEYVGPLLERKPSLLEVD 122
            LR   ++ GA  K  ++N D+DT+ + GEY    + RK S L  D
Sbjct: 1886 LRLLAAIAGAKIKEMAVNSDTDTMDLIGEYEQIDISRKASELFTD 1930


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 125 HAGRSPSPEEAKKKVFTKGTSTTNLGVAPPTIEITKDQTTSPPKEVVNKSPPVLRNRTVS 184
           +AG   + E+ KK+ F   +ST       P+ +  K +TT+PP +    S P+  ++T  
Sbjct: 199 NAGEGAAEEQEKKEEFAPSSST-------PSADSAKPETTNPPPQ-PQASEPMEEDKTAE 250

Query: 185 ESQSVVYAE 193
           E +     E
Sbjct: 251 ELEEAATKE 259


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 130 PSPEEAKKKVFTKGTSTTNLGVA---PPTIEITKDQTTSPPKEVVNKSPPVLRNRTVSES 186
           P P  +     T    TT++      PPT  +    TT+PP   VN +  V+   T   +
Sbjct: 71  PPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNT 130

Query: 187 QSVV 190
            +VV
Sbjct: 131 TTVV 134


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 116 PSLLEVDPTHAGRSPSPEEAKKKVFTKGTST---TNLGVAPPTIEITKDQ---TTSPPKE 169
           P L+  D       PS  +A K +  +G +    T   V P T E ++ Q   T SP K+
Sbjct: 535 PGLMSADQPIKVTEPS-NDADKAIVAEGPNNEEETKGPVIPETQETSEQQVHKTPSPEKQ 593

Query: 170 VVNKSPPVLRN 180
            V   PP++ N
Sbjct: 594 KVLSPPPIITN 604


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 53  EHLLKSFSNKMSVLQRVPGAKHGRALRRRMSVRGAIKKTRSINVDSDTLGMEGEYVGPLL 112
           EHL KSF N  + L++   + HGR     +S   +  +  S +  SD + ++ EY   +L
Sbjct: 657 EHLQKSFKNVFNQLRKQQPSNHGR--NSSVSRSSSSVEVNSKHPGSDDMLIDKEYTRNIL 714


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 84  VRGAIKKTRSINVDSDTLGMEGEYVGPLLERKPSLLEVDPTHAGRSPSPEEAKKKVFTKG 143
           VR   K++ S  + +D          P    KPS+ ++   H  +SPS +E   KV    
Sbjct: 138 VRPQAKRSSSRLLSTDAFSQFISSFSP--PEKPSMKDLALFHGNKSPSSKETIPKVSNSN 195

Query: 144 TSTTNL-GVAPPTIEITKDQTTSPPKEVVNKSPPVLRNRTVSESQSVV 190
           +S T+    A   + +++++      +  + +PP+ + ++ +     V
Sbjct: 196 SSDTSTDDQAYLNVSVSENEHADRSIKTHSSAPPLNQQKSSTSVNDAV 243


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 124 THAGRSPSPEEAKKKVFTKGTSTTNLGVAPPTIEITKDQTTSPPKE 169
           T    SP+P E+K ++ +  T+ T+ G +       + + +SPP E
Sbjct: 121 TETKASPTPLESKPQIVSDTTTETSNGTSRRRSSHNQHEDSSPPHE 166


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 91  TRSINVDSDTLGMEGEYVGPLLERKPSLLEVDP----THAGRSPSPEEAKKKVFTKGTST 146
           T S    S+       YV P+     S  E+      ++   S S       V +   S 
Sbjct: 180 TSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPTSSSSIALSSVVASASVSA 239

Query: 147 TNLGVAPPTIEITKDQTTSPPKEVVNKSPPVLRNRTVSESQS 188
            N GV+ P +      +++    VV+ +  V  + T+S + S
Sbjct: 240 ANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATS 281


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,401
Number of Sequences: 5004
Number of extensions: 102517
Number of successful extensions: 308
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 9
length of query: 631
length of database: 2,362,478
effective HSP length: 77
effective length of query: 554
effective length of database: 1,977,170
effective search space: 1095352180
effective search space used: 1095352180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)