GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000893-TA|BGIBMGA000893-PA|IPR008734|Phosphorylase
kinase alphabeta
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0587 + 22555414-22557231                                         33   0.91 
12_02_1111 - 26157796-26160330                                         31   3.7  
09_06_0353 + 22489265-22490401                                         31   3.7  
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    31   3.7  
06_03_0905 + 25843547-25844314                                         29   8.5  
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911...    29   8.5  
02_02_0030 - 6207784-6208154,6208286-6211310                           29   8.5  

>06_03_0587 + 22555414-22557231
          Length = 605

 Score = 32.7 bits (71), Expect = 0.91
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 399 EFAINSVGRGNFSIVSNKSNRYGKKSQIVLEGQSLQGSIDE-TPMVEPDRQGQWLRRRRL 457
           + A N +  G++S VS+ +N   K +Q++L+G +LQG++      +    +  WLR   +
Sbjct: 420 DMAYNMLEAGDWSFVSSLTN-CSKLTQLLLDGNNLQGNLPSCIGNLSSSLEHLWLRNNMI 478

Query: 458 DGAL 461
            G +
Sbjct: 479 SGLI 482


>12_02_1111 - 26157796-26160330
          Length = 844

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 137 KKVFTKGTSTTNLGVAPPTIEITKDQTTSPPKEVVNKSPPVLRNRTVSESQSVVYAEQET 196
           K  FTK     NL   PP     K+Q     K    K P + +N  ++     + +EQE 
Sbjct: 233 KPFFTK----ENLPPPPPPAPAKKEQQRWSKKAGAKKGPVLTKNELLA-----MRSEQEQ 283

Query: 197 DELLAMLRETESLDEQGDILQYLVDTHGLDFNTDMLEN 234
           DE   ++++   +D +G   + L D  GL+   +M  N
Sbjct: 284 DEQPTVVQKV--IDMRGPQARVLTDLKGLNVEQEMEAN 319


>09_06_0353 + 22489265-22490401
          Length = 378

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 13/42 (30%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 285 QKQITVGMPPNNEHTITAPLPENELRQLIHLAYGDDESTAML 326
           + ++T+GMPP++++ +   L ++E+R L  ++YGD    A++
Sbjct: 227 EPELTLGMPPHSDYGLLTILLQDEVRGL-EVSYGDGGGWAVV 267


>03_02_0234 +
           6625417-6626184,6626314-6626339,6626435-6626531,
           6627009-6627116,6627194-6627328,6627429-6627528,
           6627763-6627974,6628060-6628125,6628231-6628464,
           6628583-6628641,6628716-6628782,6628863-6629192,
           6629267-6629335,6629417-6629503,6629605-6629692,
           6630057-6630178,6630251-6630355,6630442-6630485,
           6630558-6630627,6630711-6630814,6630980-6631189,
           6632935-6633018,6633291-6634003,6634115-6634649,
           6634703-6634789,6634826-6634970,6635049-6635125,
           6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 289 TVGMPPNNEHTITAPLPEN--ELRQLIHLAYGDDEST 323
           ++ MP N+   +  PLPE+  ++ +L+ + YGD  +T
Sbjct: 538 SIDMPLNDADDVNEPLPEDIFDVEELLEICYGDPSNT 574


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 115 KPSLLEVDPTH--AGRSPSPEEAKKKVFTKGTSTTNLGVAPPTIEITKDQTTSPPKEVVN 172
           KPS     P H    ++P+P   K   +    +     VAPP + +T      PPK  V 
Sbjct: 42  KPSHPSPSPGHPKGPKNPTPRPPKGPTYPSPVTRPPPLVAPPKVPVTH-----PPKGPVT 96

Query: 173 KSPPV 177
           + PPV
Sbjct: 97  RPPPV 101


>05_03_0168 -
           9116648-9117775,9118699-9118885,9119724-9119821,
           9119948-9120114,9122242-9122578
          Length = 638

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 493 GELKFALAVETVLNSIPQPEYRQLVVEALMVLTLVVEYKAVAHLGEAIEV 542
           G+   A +VE V    P PE+R+LV    M + +V+    +  +G  I++
Sbjct: 6   GDPMSATSVEAVFEKQPSPEFRELVTPRAMAVAVVLSV-VICFVGMRIQM 54


>02_02_0030 - 6207784-6208154,6208286-6211310
          Length = 1131

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 395 LSGKEFAINSVGRGNFSIVSNKSNRYGKKSQIVLEGQSLQGSIDETPMVEPDRQGQ-WLR 453
           L   +   N +  G++S +S+ +N    K ++ L+   LQG++  +    P +    WLR
Sbjct: 440 LQDLDLGYNQLEAGDWSFLSSLANCTQLK-KLALDANFLQGTLPSSVGNLPSQLNWLWLR 498

Query: 454 RRRLDGAL 461
           + RL GA+
Sbjct: 499 QNRLSGAI 506


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,519,668
Number of Sequences: 37544
Number of extensions: 663533
Number of successful extensions: 1749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1749
Number of HSP's gapped (non-prelim): 8
length of query: 631
length of database: 14,793,348
effective HSP length: 86
effective length of query: 545
effective length of database: 11,564,564
effective search space: 6302687380
effective search space used: 6302687380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)