GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000893-TA|BGIBMGA000893-PA|IPR008734|Phosphorylase
kinase alphabeta
         (631 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            25   4.6  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   8.0  
AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    25   8.0  

>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 420 YG-KKSQIVLEGQSLQGSIDETPMVEPDRQGQWLRRRRLDGALNRVPRDFYPRVWGVLEK 478
           YG +K  +V + +  Q   D   +     + +  R+ R +G      R F+  V  V+EK
Sbjct: 212 YGPEKKTVVADAKQKQKQDDTKALPAAGGKEEETRQWRKEGGKQSKSRYFFKSVEDVIEK 271

Query: 479 GK 480
           GK
Sbjct: 272 GK 273


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 389 NLLYHILSGKEFAINSVGRGNFSIVSNKSNRYGKKSQIVLEGQSLQGS 436
           N++   +   E  +N + +  + +VS  S+R  ++SQI++EG +++ S
Sbjct: 667 NIIRQWMESVELQLN-ISKTEYILVS--SHRSRQESQIIVEGHTIRSS 711


>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 177 VLRNRTVSESQSVVYAEQETDELLAMLRETESLDEQGDILQYLVDTHGLDFNTDMLEN 234
           V++N   +        + ET E+     ET++ D + D+     +  G+ F T M ++
Sbjct: 318 VVQNSIGNNGTVKTLGQMETVEIRYFDAETQTSDVEKDLRDLFTELDGVTFETKMTKS 375


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,266
Number of Sequences: 2123
Number of extensions: 21884
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 3
length of query: 631
length of database: 516,269
effective HSP length: 68
effective length of query: 563
effective length of database: 371,905
effective search space: 209382515
effective search space used: 209382515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)