Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000893-TA|BGIBMGA000893-PA|IPR008734|Phosphorylase
kinase alphabeta
(631 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46150.2 68418.m05676 LEM3 (ligand-effect modulator 3) family... 32 1.3
At5g46150.1 68418.m05675 LEM3 (ligand-effect modulator 3) family... 32 1.3
At2g35550.2 68415.m04355 expressed protein 31 2.3
At2g35550.1 68415.m04354 expressed protein 31 2.3
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 31 2.3
At5g66700.1 68418.m08408 homeobox-leucine zipper family protein ... 30 5.4
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038... 30 5.4
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 29 7.1
At4g39920.1 68417.m05654 tubulin folding cofactor C / Porcino (P... 29 9.4
At4g26540.1 68417.m03823 protein kinase family protein Three fal... 29 9.4
At1g10470.1 68414.m01179 two-component responsive regulator / re... 29 9.4
>At5g46150.2 68418.m05676 LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein similar to GI:835763;
GI:4966357; GI:4585976; GI:11994416 from [Arabidopsis
thaliana]
Length = 343
Score = 31.9 bits (69), Expect = 1.3
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 363 ELSRTLSCDGEEASEHL----LNLSPFEMKNLLYHILSGKEFAINSVGRGNFSIVSNKSN 418
E S T SC+ EE+S L L + M N + S + +N V R N + S++ +
Sbjct: 148 EYSHTSSCEPEESSNGLPIVPCGLIAWSMFNDTF-TFSRERTKLN-VSRNNIAWKSDREH 205
Query: 419 RYGKK-SQIVLEGQSLQGSIDETPMVEPDRQGQWLRRRRLDGALNRVPRDFYPRVWGVLE 477
++GK I + +L G P + Q ++ R L+ R Y R+ LE
Sbjct: 206 KFGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSF--RKLYGRIEEDLE 263
Query: 478 KGKILQPHL 486
GK+++ +L
Sbjct: 264 PGKVVEVNL 272
>At5g46150.1 68418.m05675 LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein similar to GI:835763;
GI:4966357; GI:4585976; GI:11994416 from [Arabidopsis
thaliana]
Length = 343
Score = 31.9 bits (69), Expect = 1.3
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 363 ELSRTLSCDGEEASEHL----LNLSPFEMKNLLYHILSGKEFAINSVGRGNFSIVSNKSN 418
E S T SC+ EE+S L L + M N + S + +N V R N + S++ +
Sbjct: 148 EYSHTSSCEPEESSNGLPIVPCGLIAWSMFNDTF-TFSRERTKLN-VSRNNIAWKSDREH 205
Query: 419 RYGKK-SQIVLEGQSLQGSIDETPMVEPDRQGQWLRRRRLDGALNRVPRDFYPRVWGVLE 477
++GK I + +L G P + Q ++ R L+ R Y R+ LE
Sbjct: 206 KFGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSF--RKLYGRIEEDLE 263
Query: 478 KGKILQPHL 486
GK+++ +L
Sbjct: 264 PGKVVEVNL 272
>At2g35550.2 68415.m04355 expressed protein
Length = 226
Score = 31.1 bits (67), Expect = 2.3
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 153 PPTIEITKDQTTSPPKEVVNKSP-PVLRNRTVSESQSVVYAEQETDELLAMLRETESLDE 211
PP I +++ T + ++ VN+SP L+ + + +SV ++T + RE ++LD
Sbjct: 62 PPPIRDSRNDTETVKQKSVNQSPSKALKPKPQRKKRSVSNKSKKTPSIPETKREKKNLDI 121
Query: 212 QGDILQYLVDTHGL 225
DI + DT G+
Sbjct: 122 NIDISSF--DTSGV 133
>At2g35550.1 68415.m04354 expressed protein
Length = 271
Score = 31.1 bits (67), Expect = 2.3
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 153 PPTIEITKDQTTSPPKEVVNKSP-PVLRNRTVSESQSVVYAEQETDELLAMLRETESLDE 211
PP I +++ T + ++ VN+SP L+ + + +SV ++T + RE ++LD
Sbjct: 107 PPPIRDSRNDTETVKQKSVNQSPSKALKPKPQRKKRSVSNKSKKTPSIPETKREKKNLDI 166
Query: 212 QGDILQYLVDTHGL 225
DI + DT G+
Sbjct: 167 NIDISSF--DTSGV 178
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 31.1 bits (67), Expect = 2.3
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 132 PEEAKKKVFTKGTSTTNLG--VAPPTIEITKDQTTSPPKEVVNKSPPVLRNRTVSESQSV 189
P + +K V +G+ N G VA PT + K QTT K V PP + VS + +
Sbjct: 1140 PAQKEKVVKFEGSKVENNGKEVAKPTEQ--KSQTTKSKKAVKPDQPPSIVTELVSGKEEI 1197
Query: 190 -VYAEQETDELLAMLRETESL 209
A E +E + +E E L
Sbjct: 1198 EKSATPEEEEPPKLTKEEEEL 1218
>At5g66700.1 68418.m08408 homeobox-leucine zipper family protein
similar to Homeobox-leucine zipper protein HAT5 (HD-ZIP
protein 5) (SP:Q02283) [Arabidopsis thaliana]; contains
Pfam PF00046: Homeobox domain
Length = 228
Score = 29.9 bits (64), Expect = 5.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 173 KSPPVLRNRTVSESQSVVYAEQETDELLAMLRETESLDEQGDILQY 218
+S PV R R S E++ E+ MLR+ + DEQ ++L+Y
Sbjct: 40 ESKPVKRRRKRRSKGSSATNEEDVAEIGGMLRKRKLTDEQVNMLEY 85
>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
Nuf2 family domain; similar to Myosin-like protein NUF2
(Nuclear filament-containing protein 2) (Nuclear
division protein nuf2) (Swiss-Prot:Q10173)
[Schizosaccharomyces pombe]
Length = 974
Score = 29.9 bits (64), Expect = 5.4
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 343 QLFLEMLRLRVGLIIQVMATELS--RTLSCDGEEASEHLLNLSPFEMK-NLLYHILSGKE 399
QL+++ L +G + + +L + L + E+ ++ +L L+ +M + + K
Sbjct: 158 QLYMQ-LNAEIGEFDEAVERDLPFVQELEANIEQLNKKILELNNQQMSLRATFQKMREKS 216
Query: 400 FAI-NSVGRGNFSIVSNKSNRYGKKSQIVLEGQSLQGSIDETPMV 443
+ N + + F +V +SQIV LQG+++E +V
Sbjct: 217 TQMDNEISKAEFDLVETVQENANLRSQIVQSPDKLQGALEEKKLV 261
>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
identical to like heterochromatin protein LHP1
[Arabidopsis thaliana] GI:15625407; contains Pfam
profile PF00385: 'chromo' (CHRromatin Organization
MOdifier)
Length = 445
Score = 29.5 bits (63), Expect = 7.1
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 101 LGMEGEYVGP--LLERKPSLLEVDPTHAGRSPSPEEAKKKVFTKGTSTTNLGVAPPTIEI 158
+G EG+ V P LL+ P L+ + G + K+ F + ST+N AP +
Sbjct: 284 IGSEGDNVRPNGLLKVYPKELDKNSRFIGAKRRKSGSVKR-FKQDGSTSNNHTAPTDQNL 342
Query: 159 TKDQTTSPP----KEVVNKSPPVLRNRTVSESQSVVYAEQETDELLAMLRETESLDE 211
T D TT + N+ P V+ N +S+ + E + ++L + T S+ +
Sbjct: 343 TPDLTTLDSFGRIARMGNEYPGVMENCNLSQKTKI--EELDITKILKPMSFTASVSD 397
>At4g39920.1 68417.m05654 tubulin folding cofactor C / Porcino (POR)
identical to tubulin-folding cofactor C (Porcino; POR)
GI:20514261 from [Arabidopsis thaliana]; identical to
cDNA tubulin folding cofactor C GI:20514260
Length = 345
Score = 29.1 bits (62), Expect = 9.4
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Query: 55 LLKSFSNKMSVLQRVPGAKHGRALRRRMSVRGAIKKTRSINVDS-DTLGMEGEYVGPLLE 113
L K +K S+ R+ ++ + ++ + + S+ +D+ + L E Y P E
Sbjct: 57 LAKFSDSKRSIESRIAESRLASSSTDSSKLKSDLAEI-SVAIDNLEKLLAENSYFLPSYE 115
Query: 114 RKPSLLEV-DPTHAGRSPSPEEAKKKVFTKGTSTTNLGVAPPTIEITKDQTTSPPKEVVN 172
+ SL V D + S E KK F+ + +T EI K PPK V
Sbjct: 116 VRSSLKIVSDLKQSLDILSGELVPKKKFSFKSKSTTKKPESKLPEIQKPDVVLPPKLVPV 175
Query: 173 KSPPVLRNR 181
+ P LRN+
Sbjct: 176 RDSPGLRNK 184
>At4g26540.1 68417.m03823 protein kinase family protein Three false
introns were added with non-consensus splice sites to
circumenvent frameshifts likely due to sequencing
errors; this is extremely unusual and is under
investigation.
Length = 1089
Score = 29.1 bits (62), Expect = 9.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 413 VSNKSNRYGKKSQIVLEGQSLQGSIDETPM 442
V K NR G+ S+I L+G LQGS+ T +
Sbjct: 60 VGVKCNRRGEVSEIQLKGMDLQGSLPVTSL 89
>At1g10470.1 68414.m01179 two-component responsive regulator /
response regulator 4 (ARR4) identical to responce
regulator1 GI:3273195 from [Arabidopsis thaliana];
identical to cDNA ARR4 mRNA for response regulator 4
GI:3953596
Length = 259
Score = 29.1 bits (62), Expect = 9.4
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 124 THAGRSPSPEEAKKKVFTKGTSTTNLGVAPPTIEITKDQTTSPP----KEVVNKSPPVLR 179
+H + K+ + +S+ N + PP+ +T +SPP E + SPP+
Sbjct: 159 SHLTKDVKLSNGNKRKLPEDSSSVNSSLPPPSPPLTISPESSPPLTVSTESSDSSPPLSP 218
Query: 180 NRTVSESQSVVYAEQETDELLAMLRETESLDEQ 212
S S + E D++L E + Q
Sbjct: 219 VEIFSTSPLSSPIDDEDDDVLTSSSEESPIRRQ 251
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,277,245
Number of Sequences: 28952
Number of extensions: 542302
Number of successful extensions: 1556
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 12
length of query: 631
length of database: 12,070,560
effective HSP length: 85
effective length of query: 546
effective length of database: 9,609,640
effective search space: 5246863440
effective search space used: 5246863440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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