GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000892-TA|BGIBMGA000892-PA|IPR008734|Phosphorylase
kinase alphabeta, IPR008928|Six-hairpin glycosidase
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    28   3.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   3.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.7  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    27   4.7  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   4.7  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    27   6.2  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   8.2  

>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 52  LAVWGLSMAFKKIA--DQDE-DRAKTYELEQSCVKLMRGLLMAMMQQKDKVEKFKTTQHS 108
           LAV  +S   K+ +  DQ E +  KT  LE   V      L+ +M   +  E FK+T+  
Sbjct: 30  LAVQQVSSYIKRASADDQSELESVKTQLLEMIRVVTPAIELIEIMSVGEN-ENFKSTKQL 88

Query: 109 LDSLHAKYSSTTGQIV 124
           +DSLHA     T  ++
Sbjct: 89  VDSLHADIEQFTKHVL 104


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 212 MNELDLFGARGGPSSVIHVLADEAQKCQAVLQSMLPRESNSKELDSGLLSI-ISYPAFAV 270
           M   D F     P  +  +++DE+QK  A+L+S+L    NS  +   + S+ +++  + +
Sbjct: 397 MQRYDSFIKPSLPKFISSLVSDESQKSLAILESVL---DNSVPVPVDVASVSLNHFVYCI 453

Query: 271 DDPQLIAKTRDAIIT 285
           +  Q+++ + + II+
Sbjct: 454 ERLQIVSPSYEDIIS 468


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 445  LAEDNDIRDKLLEYDLHVQTISEVAPIE 472
            L+ED DI D+L +Y++ +  +    PI+
Sbjct: 4401 LSEDEDIEDELPDYNVKITNLPAAMPID 4428


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 10/65 (15%)

Query: 450 DIRDKLLEY--------DLHVQTISEVAPIEVQPARVLSHLYTYLGKVSEDGSYVMYIIQ 501
           DI+DKL+          D+H  TIS      V+ + V + LY YLG++ E G   +Y+ +
Sbjct: 302 DIKDKLVRSSALYDRVGDVHYDTISAFHK-SVRGSDVDATLY-YLGRMLESGEDPLYVAR 359

Query: 502 MTIRV 506
             +R+
Sbjct: 360 RMVRI 364


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 92  MMQQKDKVE-KFKTTQHSLDSLHAKYSSTTGQIVVKDNEW 130
           M +Q  K    F +T++SL    ++YS    + V+K N W
Sbjct: 1   MTEQSSKSHPSFMSTEYSLPVFSSQYSDIENKDVLKSNSW 40


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 372 LYSVPADKADLEQSEPGTQERI--PLGRCPFIWAQSLYILG 410
           LY+ P+  + + Q+ P    ++  P GR  F+WAQS Y  G
Sbjct: 76  LYTSPSPSS-ISQAGPFAISQVFGPAGRLYFLWAQSTYAGG 115


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 85  MRGLLMAMMQQKDKVEKF-KTTQHSLDSLHAKYSSTTGQIVVKDNEWGHLQIDAISLYLL 143
           ++G+L     +K K  +  ++T +   ++H   SS    +V++  E GHL     SLY  
Sbjct: 93  VKGVLHYKDNKKQKTTRLIESTNYQRQTIHGASSS----LVIEVEENGHLSNMQGSLYET 148

Query: 144 ILAQMTASGLQIVFSLDEVAFIQN 167
            L  + A GL   F +  +A+  N
Sbjct: 149 PLRILDAPGLLDDFYISPLAWSTN 172


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,236
Number of Sequences: 5004
Number of extensions: 100400
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 9
length of query: 509
length of database: 2,362,478
effective HSP length: 76
effective length of query: 433
effective length of database: 1,982,174
effective search space: 858281342
effective search space used: 858281342
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)