GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000892-TA|BGIBMGA000892-PA|IPR008734|Phosphorylase
kinase alphabeta, IPR008928|Six-hairpin glycosidase
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0707 + 26467214-26470309                                         31   2.2  
03_05_0536 - 25357355-25357411,25357463-25357588,25357764-253578...    30   5.0  
02_05_1324 - 35702184-35702267,35702405-35702476,35702675-357027...    30   5.0  
03_02_0286 + 7100342-7100504,7100613-7100719,7102109-7102240,710...    29   8.8  

>11_06_0707 + 26467214-26470309
          Length = 1031

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 308 PNRLYYEPWELRMFENIECEWPLFFCYLILDYCFQGD-KINGGEYMQKLEKIMIRKDDGI 366
           P+ LY++ W  +M + +        CYL  + CF GD +  G   M K+ +I +  +  +
Sbjct: 478 PDGLYFDHWSCKMHDLLR----QLACYLSREECFVGDVESLGTNTMCKVRRISVVTEKDM 533

Query: 367 RLVPEL 372
            ++P +
Sbjct: 534 MVLPSI 539


>03_05_0536 -
           25357355-25357411,25357463-25357588,25357764-25357892,
           25358015-25358164,25358253-25358373,25360946-25361247
          Length = 294

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 197 LNASSIGMAKAALEAMNELDLFGARGGPSS-VIHVLADEAQKCQAVLQS 244
           L+  S+   K  LEA    +LF    G SS V+ +  DEAQ  Q+   S
Sbjct: 117 LDRHSLRQKKRVLEAKERAELFERANGESSHVLRIFDDEAQAMQSARSS 165


>02_05_1324 -
           35702184-35702267,35702405-35702476,35702675-35702740,
           35702826-35702857,35702941-35703100,35703254-35703389,
           35703453-35703598,35703827-35704072,35704152-35704259,
           35704436-35704557,35704730-35704820,35704903-35705133,
           35705212-35705355,35705875-35705951,35706158-35706281,
           35706368-35706535,35706625-35706948
          Length = 776

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 64  IADQDEDRAKTYELEQSCVKLMRGLLMAMMQQKDKVEKFKTTQHSLDSLHA 114
           +A +DE R K  ++EQ   KL +     ++    K EK  T ++ +D L A
Sbjct: 216 VALEDEQREKFNQIEQELEKLTQKFSENVLDATKKFEKLITDKNEIDGLPA 266


>03_02_0286 +
           7100342-7100504,7100613-7100719,7102109-7102240,
           7102383-7102539,7103099-7103220
          Length = 226

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 350 EYMQKLEKIMIRKDDGIRLVPELYSVP--ADKADLEQSEPGTQERIPLGRCPFIWAQSLY 407
           E+ +KL  + IRK+D  RLV          D AD  + E GTQ  I L            
Sbjct: 12  EWERKLRDVKIRKEDMNRLVMNFLVTEGFVDAADKFRVESGTQPDIDLATITDRMEVKRA 71

Query: 408 ILGKLLQEGFLAVGELDP 425
           +    +QE    + +L+P
Sbjct: 72  VQSGNVQEAIEKINDLNP 89


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,450
Number of Sequences: 37544
Number of extensions: 620021
Number of successful extensions: 1242
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 4
length of query: 509
length of database: 14,793,348
effective HSP length: 85
effective length of query: 424
effective length of database: 11,602,108
effective search space: 4919293792
effective search space used: 4919293792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)