GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000892-TA|BGIBMGA000892-PA|IPR008734|Phosphorylase
kinase alphabeta, IPR008928|Six-hairpin glycosidase
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54557| Best HMM Match : PHK_AB (HMM E-Value=0)                     289   5e-78
SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)               136   3e-32
SB_42728| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.95 
SB_7392| Best HMM Match : Ricin_B_lectin (HMM E-Value=4.6e-32)         32   0.95 
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       30   5.1  
SB_13062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_27292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.9  

>SB_54557| Best HMM Match : PHK_AB (HMM E-Value=0)
          Length = 863

 Score =  289 bits (708), Expect = 5e-78
 Identities = 167/407 (41%), Positives = 228/407 (56%), Gaps = 38/407 (9%)

Query: 99  VEKFKTTQHSLDSLHAKYSSTTGQIVVK-DNEWGHLQIDAISLYLLILAQMTASGLQIVF 157
           VE FK  Q S +SLH  +   TG  + K D E+ HLQ                    I++
Sbjct: 1   VELFKRNQLSENSLHVLFDVNTGDPIYKADTEYSHLQ--------------------IIY 40

Query: 158 SLDEVAFIQNLVFYIESAYCTPDYGIWERGDKTNHGLPELNASSIGMAKAALEAMNELDL 217
           + DEV FIQNLV+YIE AY TPDYG+WERG K N G  ELNA+SIGMAKAALE +N  +L
Sbjct: 41  TSDEVNFIQNLVYYIERAYRTPDYGMWERGSKENIGHKELNATSIGMAKAALETINGFNL 100

Query: 218 FGARGGPSSVIHVLADEAQKCQAVLQSMLPRESNSKELDSGLLSIISYPAFAVDDPQLIA 277
           +G +G  SSVI+V  D   +   +L S+LP  S+SK  D+ LL I  +P FAVDD  L  
Sbjct: 101 YGGQGTSSSVIYVDPDAHNRNSTILHSLLPVASSSKVTDASLLMITGFPCFAVDDDTLRK 160

Query: 278 KTRDAIITKLQGKYGCKRFLRDGHKTPREDPNRLYYEPWELRMFENIECEWPLFFCYLIL 337
           KT+  ++ KL+GKYG KR++RDG+K   ED NR YYE  EL  F  IE EWP+FF YL +
Sbjct: 161 KTQALVLEKLEGKYGLKRYMRDGYKCVLEDKNRKYYEKRELEYFHGIENEWPIFFAYLAI 220

Query: 338 DYCFQGDKINGGEYMQKLEKIMIRKDDGIRLVPELYSVPADKADLEQSEPGTQERI-PLG 396
           D  F+ D      Y++ L+  ++   D   ++P  Y VP    D E+ +P +Q R+   G
Sbjct: 221 DARFRHDYECANHYVKLLQDGLLTSSDYGDVMPHYYYVPKIYIDAERRKPHSQVRLHSEG 280

Query: 397 RCPFIWAQSLYILGKLLQEGFLAVGELDPLNRRLCSEKK----------------PDVVV 440
              F+W QS+ IL +LL E  L + ELDP+ R L    K                 D+VV
Sbjct: 281 EDLFLWGQSMLILMELLAEDLLDINELDPIGRHLIPSAKARHSFNYRYSYFTVSEADIVV 340

Query: 441 QIVILAEDNDIRDKLLEYDLHVQTISEVAPIEVQPARVLSHLYTYLG 487
           Q+ +++E  +++  L  + +  QT  ++ PI++ P   L   Y  LG
Sbjct: 341 QVALISESRNLQSILATFGIETQTPQQIEPIQIWPPAQLIQAYERLG 387


>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
          Length = 732

 Score =  136 bits (330), Expect = 3e-32
 Identities = 66/139 (47%), Positives = 97/139 (69%)

Query: 350 EYMQKLEKIMIRKDDGIRLVPELYSVPADKADLEQSEPGTQERIPLGRCPFIWAQSLYIL 409
           +Y   LE ++I+ + G+ L+PEL+ VP DK   E++ P + +R+     P +W+QSLYI+
Sbjct: 3   KYTTLLEPLLIKDETGLVLMPELFFVPRDKVSEEKANPHSVDRMGGEYAPHMWSQSLYIV 62

Query: 410 GKLLQEGFLAVGELDPLNRRLCSEKKPDVVVQIVILAEDNDIRDKLLEYDLHVQTISEVA 469
             LLQE F+A+GELDPLNRR  +E +PDVVVQ+ +LAED+++R +L   ++ VQ + +V 
Sbjct: 63  ACLLQEKFVAMGELDPLNRRQSTESRPDVVVQVALLAEDDNVRAQLSLLEVPVQVVRQVH 122

Query: 470 PIEVQPARVLSHLYTYLGK 488
           PI+V PA VLS  Y  LGK
Sbjct: 123 PIQVLPAHVLSTTYQQLGK 141


>SB_42728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 239 QAVLQSMLPRESNSKELDSGLLSIISYPAFAVDDPQLIAKTRDAIITKLQGKYGCKRFLR 298
           +A L++  P+  N+K LDS  LSI       + D Q    T+   I + QG+ G K F  
Sbjct: 43  RAELETWKPKSKNTKHLDSHELSIPPNKLLRIQDFQSTYVTQIPRIAQ-QGENGAKVFNS 101

Query: 299 DGHKTPREDPNRLY 312
              K   ++  RLY
Sbjct: 102 PSEKEIEKERFRLY 115


>SB_7392| Best HMM Match : Ricin_B_lectin (HMM E-Value=4.6e-32)
          Length = 594

 Score = 32.3 bits (70), Expect = 0.95
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 239 QAVLQSMLPRESNSKELDSGLLSIISYPAFAVDDPQLIAKTRDAIITKLQGKYGCKRFLR 298
           +A L++  P+  N+K LDS  LSI       + D Q    T+   I + QG+ G K F  
Sbjct: 19  RAELETWKPKSKNTKHLDSHELSIPPNKLLRIQDFQSTYVTQIPRIAQ-QGENGAKVFNS 77

Query: 299 DGHKTPREDPNRLY 312
              K   ++  RLY
Sbjct: 78  PSEKEIEKERFRLY 91


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 18/80 (22%), Positives = 39/80 (48%)

Query: 364 DGIRLVPELYSVPADKADLEQSEPGTQERIPLGRCPFIWAQSLYILGKLLQEGFLAVGEL 423
           D +R   ELY    D   L + +     R+ LG    I   +  + GK+++EGF +  + 
Sbjct: 507 DTLRKALELYPTLNDLVTLVRGDLSKLARLILGALIVIEVHACDVAGKMVEEGFQSANDF 566

Query: 424 DPLNRRLCSEKKPDVVVQIV 443
           + +++     ++ ++V++ V
Sbjct: 567 EWISQLRYYWEEDNMVIRAV 586


>SB_13062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 34  PASPQNDHAWIRDNLYCILAVWGLSMAFKKIADQDEDRAKTYELEQSCVKLMRGLLMAMM 93
           P  P  D  W+      IL+ W      + I D D    +  EL Q   +   GL  A+ 
Sbjct: 103 PNRPMVD--WLATFYDVILSTWHTECITEYIKDDDNVLVRLIELRQVSTRFALGLETAIN 160

Query: 94  QQKDKVEKFKTTQHSLDSLHAKYS 117
           QQ+ K      T   +D++ + Y+
Sbjct: 161 QQQSKCNPASITT-LVDAVFSPYT 183


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 45   RDNLYCILAVWGLSMA-FKKIADQDEDRAKTYELEQSCVKLMRGLLMAMMQQKDKVEKFK 103
            RD  +    VW L +A +  + D+D     TYE + +    +   L    + + KVE  K
Sbjct: 1174 RDVAFQHSLVWDLVVALWGDLGDKDTASQGTYEHQVARRNALSHWLAEAAKDRVKVEVDK 1233

Query: 104  TTQHSLDSLHAKYSSTTGQIVVK 126
                  D L+A +S  TGQ + K
Sbjct: 1234 ANFEDGDYLNAIFSHLTGQQISK 1256


>SB_27292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 76  ELEQSCVKLMRGLLMAMMQQKDKVEKFKTTQHSLDS---LHAKYSSTTGQIVVKDNEW 130
           +LEQ+C K   GLLM +   +  +E F+  +  L S   L A Y++  G + +   EW
Sbjct: 425 DLEQTCSKRTVGLLMDVTSHEQIIEAFEQVKRVLPSGTGLWAVYNN-AGYMTLAPLEW 481


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,858,906
Number of Sequences: 59808
Number of extensions: 709263
Number of successful extensions: 1495
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1487
Number of HSP's gapped (non-prelim): 12
length of query: 509
length of database: 16,821,457
effective HSP length: 85
effective length of query: 424
effective length of database: 11,737,777
effective search space: 4976817448
effective search space used: 4976817448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)