GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000892-TA|BGIBMGA000892-PA|IPR008734|Phosphorylase
kinase alphabeta, IPR008928|Six-hairpin glycosidase
         (509 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...   548   e-156
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...   178   7e-45
AC024848-2|AAV34781.1|  245|Caenorhabditis elegans Hypothetical ...   177   2e-44
AC024848-1|AAV34780.1|  258|Caenorhabditis elegans Hypothetical ...   116   5e-26
AC024848-3|AAP31424.1|   83|Caenorhabditis elegans Hypothetical ...    42   0.001
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    33   0.48 
AF016685-2|AAG24148.1|  404|Caenorhabditis elegans Hypothetical ...    30   4.4  
Z11126-5|CAA77472.2|  180|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z68213-5|CAA92434.1|  512|Caenorhabditis elegans Hypothetical pr...    29   7.8  
U29244-15|AAC71096.2|  471|Caenorhabditis elegans Hypothetical p...    29   7.8  
AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical ...    29   7.8  

>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
           protein C14B9.8 protein.
          Length = 1226

 Score =  548 bits (1353), Expect = e-156
 Identities = 267/492 (54%), Positives = 347/492 (70%), Gaps = 5/492 (1%)

Query: 1   MRTRSNSGVRLDYYQRIIHKLILDHQQPVTGLFPASPQ-NDHAWIRDNLYCILAVWGLSM 59
           MR+RS SGVRLD    ++ + I  HQ P+T LF        HAW+RDN+Y   A+W L  
Sbjct: 1   MRSRSGSGVRLDRILFMVEQTICSHQNPITALFANQKDFPGHAWVRDNVYIAQALWALYR 60

Query: 60  AFKKIADQDEDRAKTYELEQSCVKLMRGLLMAMMQQKDKVEKFKTTQHSLDSLHAKYSST 119
           A+ K AD DED  K  EL  +CVK+M+ +L  +M+Q +KVE FK  Q  LD+LH+K++  
Sbjct: 61  AYMKCADFDEDLTKAKELGFTCVKMMQSILECLMRQAEKVELFKKYQRPLDALHSKFAVG 120

Query: 120 TGQIVVKDNEWGHLQIDAISLYLLILAQMTASGLQIVFSLDEVAFIQNLVFYIESAYCTP 179
           T   V  D +WGHLQ+DAISLYLL LAQ+TASGLQ+V + DEVAFIQNLV+YIE+ Y TP
Sbjct: 121 TKGTVCGDADWGHLQMDAISLYLLTLAQITASGLQVVRNFDEVAFIQNLVYYIETGYRTP 180

Query: 180 DYGIWERGDKTNHGLPELNASSIGMAKAALEAMNEL-DLFGARGGPSSVIHVLADEAQKC 238
           DYG+WERGDKTN G+ ELNASSIGM KAAL+A+N++ DLF   G   SV+HVL DE ++C
Sbjct: 181 DYGVWERGDKTNQGIRELNASSIGMVKAALQALNDVGDLF-VDGSRGSVVHVLPDEIEQC 239

Query: 239 QAVLQSMLPRESNSKELDSGLLSIISYPAFAVDDPQLIAKTRDAIITKLQGKYGCKRFLR 298
            AVL SMLPRES SKE D+ LL IISYPAF V+DP+L+++TR+ I  +L GKYGC+RF+R
Sbjct: 240 SAVLSSMLPRESFSKETDAALLGIISYPAFCVEDPELVSQTRETITQRLLGKYGCRRFMR 299

Query: 299 DGHKTPREDPNRLYYEPWELRMFENIECEWPLFFCYLILDYCFQGDKINGGEYMQKLEKI 358
           DG+KT  ED +RLYY   EL+ FE+IECEWP+F CYLILD  +  D      Y ++LE +
Sbjct: 300 DGYKTVLEDASRLYYNKSELQQFEDIECEWPIFLCYLILDAMYSKDDDAVEAYWRQLESV 359

Query: 359 MIRKDDGIRLVPELYSVPADKADLEQSEPGTQERIPLGRCPFIWAQSLYILGKLLQEGFL 418
           ++  D G RLVPELY V  +    E++ PGTQ+R+P G  PF+WAQSLY++  LL EGFL
Sbjct: 360 LVLSDKGFRLVPELYVVLKEHVSAEKAHPGTQDRVPGGATPFLWAQSLYVIICLLYEGFL 419

Query: 419 AVGELDPLNRRL-CSEKKPDVVVQIVILAEDNDIRDKLLEYDLHVQTISEVAPI-EVQPA 476
              ELDPL+RRL   EK+P   VQ+ +LAE  D++ +L  +D+HVQ + E+ P+  + PA
Sbjct: 420 LPAELDPLSRRLSVYEKRPPCEVQVTVLAESLDVQRELRAHDIHVQCVDEIDPVFTILPA 479

Query: 477 RVLSHLYTYLGK 488
             L  L   +G+
Sbjct: 480 SALGQLLAKIGE 491


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score =  178 bits (434), Expect = 7e-45
 Identities = 98/305 (32%), Positives = 169/305 (55%), Gaps = 20/305 (6%)

Query: 204 MAKAALEAMNELDLFGARGGPSSVIHVLADEAQKCQAVLQSMLPRESNSKELDSGLLSII 263
           M KAALEA+N  +L+G+ G  +SVI+V  D   + +   +++LPRESNSK  D+ LL  +
Sbjct: 1   MVKAALEAINGFNLYGSTGTSASVIYVDIDGHNRNRTTFETILPRESNSKNTDAALLMTV 60

Query: 264 SYPAFAVDDPQLIAKTRDAIITKLQGKYGCKRFLRDGHKTPREDPNRLYYEPWELRMFEN 323
            +PAFA  D  L  KT    + +L+G++G +RF RDG +T  ED ++ +Y+  E   F+ 
Sbjct: 61  GWPAFATHDETLFEKTMQKCVRRLEGRFGLRRFHRDGFRTELEDNSKSFYDEHETAQFQG 120

Query: 324 IECEWPLFFCYLILDYCFQGDKINGGEYMQKLEKIMIRKD--DGIRLVPELYSVPADKAD 381
           +E ++P+F   + L    + ++  G  Y +KL+K ++  +   G  +VPE Y V     D
Sbjct: 121 VESQFPIFLACISLTAYIRANQEYGDIYFKKLQKCLVADETVPGGYIVPECYCVDEFIMD 180

Query: 382 LEQSEPGTQERIPLGRCPF---IWAQSLYILGKLLQEGFLAVGELDPLNRRLCSEKKP-- 436
            E+ +P + E   L    F   +W+ ++YI+  L +EG +  G++DP+NR L + ++P  
Sbjct: 181 KEREQPNSTELYALSHQEFGHHLWSNAIYIILMLKREGLIHSGDIDPINRHLPASQRPKM 240

Query: 437 -------------DVVVQIVILAEDNDIRDKLLEYDLHVQTISEVAPIEVQPARVLSHLY 483
                        D VVQ+ +++E   ++  L  Y +  QT  EV P+++ P+  +  ++
Sbjct: 241 FNRHSAFQGSMEGDPVVQVALISESPRLQMMLSTYGITTQTPHEVEPVQIWPSWRMVKVF 300

Query: 484 TYLGK 488
             LG+
Sbjct: 301 ECLGR 305


>AC024848-2|AAV34781.1|  245|Caenorhabditis elegans Hypothetical
           protein Y67D8A.2c protein.
          Length = 245

 Score =  177 bits (430), Expect = 2e-44
 Identities = 84/198 (42%), Positives = 132/198 (66%), Gaps = 7/198 (3%)

Query: 10  RLDYYQRIIHKLILDHQQPVTGLFPA-SPQNDHAWIRDNLYCILAVWGLSMAFKKIADQD 68
           ++D    +  +LI+  Q   +GLFP  S   D  +++D++YC +A W  S+A+K++   D
Sbjct: 49  KIDQIYDLTQELIVQCQSVTSGLFPRYSKDRDVGYVKDSIYCAMACWACSVAYKRL---D 105

Query: 69  EDRAKTYELEQSCVKLMRGLLMAMMQQKDKVEKFKTTQHSLDSLHAKYSSTTGQIVVKDN 128
           +DR +  EL Q+ VK MRG+L + MQQ   ++ FK+   S  +LHA++  ++G  +   N
Sbjct: 106 DDRGRQTELRQTAVKTMRGILFSWMQQSKNLDAFKSQNSSEFALHARFDLSSGMGLETPN 165

Query: 129 E---WGHLQIDAISLYLLILAQMTASGLQIVFSLDEVAFIQNLVFYIESAYCTPDYGIWE 185
           +   +GHLQ+D ++LYLL L QM ++G +++++  EV FIQNLVFYIE  Y TPD+G+WE
Sbjct: 166 DDLHYGHLQMDLVALYLLTLVQMISAGCKVIYTHHEVNFIQNLVFYIERTYRTPDFGMWE 225

Query: 186 RGDKTNHGLPELNASSIG 203
           RG + N+G PEL+ASS+G
Sbjct: 226 RGTRYNNGKPELHASSLG 243


>AC024848-1|AAV34780.1|  258|Caenorhabditis elegans Hypothetical
           protein Y67D8A.2a protein.
          Length = 258

 Score =  116 bits (278), Expect = 5e-26
 Identities = 55/161 (34%), Positives = 100/161 (62%), Gaps = 7/161 (4%)

Query: 10  RLDYYQRIIHKLILDHQQPVTGLFPA-SPQNDHAWIRDNLYCILAVWGLSMAFKKIADQD 68
           ++D    +  +LI+  Q   +GLFP  S   D  +++D++YC +A W  S+A+K++   D
Sbjct: 49  KIDQIYDLTQELIVQCQSVTSGLFPRYSKDRDVGYVKDSIYCAMACWACSVAYKRL---D 105

Query: 69  EDRAKTYELEQSCVKLMRGLLMAMMQQKDKVEKFKTTQHSLDSLHAKYSSTTGQIVVKDN 128
           +DR +  EL Q+ VK MRG+L + MQQ   ++ FK+   S  +LHA++  ++G  +   N
Sbjct: 106 DDRGRQTELRQTAVKTMRGILFSWMQQSKNLDAFKSQNSSEFALHARFDLSSGMGLETPN 165

Query: 129 E---WGHLQIDAISLYLLILAQMTASGLQIVFSLDEVAFIQ 166
           +   +GHLQ+D ++LYLL L QM ++G +++++  E+  ++
Sbjct: 166 DDLHYGHLQMDLVALYLLTLVQMISAGCKVIYTHHEILLVK 206


>AC024848-3|AAP31424.1|   83|Caenorhabditis elegans Hypothetical
           protein Y67D8A.2b protein.
          Length = 83

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 15/40 (37%), Positives = 29/40 (72%)

Query: 127 DNEWGHLQIDAISLYLLILAQMTASGLQIVFSLDEVAFIQ 166
           D  +GHLQ+D ++LYLL L QM ++G +++++  E+  ++
Sbjct: 9   DLHYGHLQMDLVALYLLTLVQMISAGCKVIYTHHEILLVK 48


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 33.1 bits (72), Expect = 0.48
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 444 ILAEDNDIRDKLLEYDLHVQTISEVAPIEVQPARVLSHLYTY---LGKVSEDGSYVMYII 500
           ++AED D   ++   +   Q + ++ P E+  AR++ HL++Y   L  V ED ++ + ++
Sbjct: 274 LIAEDTDANQRISGLEKMKQVVDQITPEEI--ARLVPHLHSYLLMLSNVLEDLNFKVVVL 331

Query: 501 QMTI 504
            + I
Sbjct: 332 ALDI 335


>AF016685-2|AAG24148.1|  404|Caenorhabditis elegans Hypothetical
           protein F59E11.10 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)

Query: 333 CYLILDYCFQ--GDKINGGEYMQKLE 356
           C++I D CFQ  G K+ GGE  QKLE
Sbjct: 307 CFIICDLCFQYLGIKV-GGEIQQKLE 331


>Z11126-5|CAA77472.2|  180|Caenorhabditis elegans Hypothetical
           protein ZK643.6 protein.
          Length = 180

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 421 GELDPLNRRLCSEK-KPDVVVQIVILAEDNDIRDKLLE 457
           G+ +  N  LCS+K KPD+ V +  L    +  DKL E
Sbjct: 39  GKCNRKNANLCSDKSKPDICVNLKTLCNSVEFYDKLSE 76


>Z68213-5|CAA92434.1|  512|Caenorhabditis elegans Hypothetical
           protein C01F6.1 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 352 MQKLEKIMIRKDDGIRLVPELYSVPADKADLEQSE 386
           M+ LEK+ ++  DG  LV + YS   D +DLE S+
Sbjct: 458 MRNLEKLTLKHSDGRLLVRQNYSY-VDPSDLESSD 491


>U29244-15|AAC71096.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK1248.15 protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 10/24 (41%), Positives = 19/24 (79%)

Query: 442 IVILAEDNDIRDKLLEYDLHVQTI 465
           I+++ ED ++ +K L +DLHV+T+
Sbjct: 276 IILVTEDVNLSNKALTHDLHVETV 299


>AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical
           protein K04F1.13 protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 231 LADEAQKCQAVLQSMLPRESNSKELDSGLLSIISYPAFAVDDPQLI 276
           L D    CQ ++  ++  + N KE++    +II Y +F ++D + +
Sbjct: 335 LKDVDSNCQHIVGDIVINDKNEKEIEKLNKAIIIYGSFTIEDTKYL 380


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,546,488
Number of Sequences: 27539
Number of extensions: 539825
Number of successful extensions: 1115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 12
length of query: 509
length of database: 12,573,161
effective HSP length: 84
effective length of query: 425
effective length of database: 10,259,885
effective search space: 4360451125
effective search space used: 4360451125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)