GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000892-TA|BGIBMGA000892-PA|IPR008734|Phosphorylase
kinase alphabeta, IPR008928|Six-hairpin glycosidase
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    30   3.2  
At5g27220.1 68418.m03247 protein transport protein-related low s...    29   5.5  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    29   5.5  
At5g45690.1 68418.m05617 expressed protein                             29   7.3  
At5g07970.1 68418.m00926 dentin sialophosphoprotein-related cont...    29   9.7  

>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 404 QSLYILGKLLQEG-FLAVGELDPLNRRLCSEKKPDVVVQIVILAEDNDIRDKLLEYDLHV 462
           Q+  +L   +  G FL       L   LC + KPD+  ++VI A + D+  K +     +
Sbjct: 445 QAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKPDMARELVIAAAERDLLPKRIAGCKII 504

Query: 463 QTISEVAPIEVQPARVLSHLYTYLGKVSEDGSYVMY 498
             + +V   +V+ A +++ L+    K   D S+ M+
Sbjct: 505 SALCDVG--KVEDALMINELF---NKSGVDTSFKMF 535


>At5g27220.1 68418.m03247 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 64  IADQDEDRAKTYELEQSCVKLMRGLLMAMMQQKDKVEKFKTTQHS----LDSLHAKYSST 119
           + +  E+ A   E      + +R L + ++ ++  +++    QHS    LDS       T
Sbjct: 443 LEEHSEELAIKEERHNEIAEAVRKLSLEIVSKEKTIQQLSEKQHSKQTKLDSTEKCLEET 502

Query: 120 TGQIVVKDNE 129
           T ++V K+NE
Sbjct: 503 TAELVSKENE 512


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 6    NSGVRLDYYQRIIHKLILDHQQPVTGL 32
            N G ++  Y+ I+HK++  H+QPVT L
Sbjct: 3522 NLGDQVPEYKLILHKVLKFHKQPVTAL 3548


>At5g45690.1 68418.m05617 expressed protein
          Length = 247

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 225 SSVIHVLADEAQKCQAVLQSMLPRE-----SNSKELDSGLLSIISYPAFAVDDPQLIAKT 279
           SS  H++  E    + + +S+ P E     S+  E+ +GLL     P      P+L+AKT
Sbjct: 90  SSKPHLIGIEYIVSERLFESLDPEEQKLWHSHDYEIQTGLLVT---PRV----PELVAKT 142

Query: 280 RDAIITKLQGKYGCKRFLRDGHKTPREDPNRLYYEPWELRM 320
               I K  GK+ C      G K P   P+ L   P ++ M
Sbjct: 143 ELENIAKTYGKFWCTWQTDRGDKLPLGAPS-LMMSPQDVNM 182


>At5g07970.1 68418.m00926 dentin sialophosphoprotein-related contains
            weak similarity to Swiss-Prot:Q9NZW4 dentin
            sialophosphoprotein precursor [Homo sapiens]
          Length = 1097

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 415  EGFLAVGELDPLNRRLCSEKKPDVVVQIVILAEDNDIRDKLLEYD 459
            EGFL    L+PL+ R  +EK  D  +     AED   R K LE D
Sbjct: 983  EGFLLQNNLNPLSERTETEKMSDQYISKA--AEDFISRTKKLETD 1025


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,017,545
Number of Sequences: 28952
Number of extensions: 514462
Number of successful extensions: 1080
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 5
length of query: 509
length of database: 12,070,560
effective HSP length: 84
effective length of query: 425
effective length of database: 9,638,592
effective search space: 4096401600
effective search space used: 4096401600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)