Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000891-TA|BGIBMGA000891-PA|IPR006201|Neurotransmitter-
gated ion-channel, IPR006028|Gamma-aminobutyric acid A receptor,
IPR001390|Gamma-aminobutyric-acid A receptor, alpha subunit,
IPR006202|Neurotransmitter-gated ion-channel ligand-binding,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    30   0.94 
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       27   5.0  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   5.0  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    27   6.6  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    27   6.6  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    27   8.7  

>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 497

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 1  MTSYQNKYCMIVTKGFEFTSLVNKSMSKTRKSAGEGNKASSSSIGSDGHP 50
          ++ YQ+ Y   V +  E   + NK    TR    +GN +   ++  D +P
Sbjct: 32 ISEYQSDYSKTVFEEIELEVIPNKQNISTRSFRNDGNDSDPQTLDPDAYP 81


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 5/33 (15%)

Query: 335 REGDFS-----VLQVSFNLKRHTGYFLIQVYVP 362
           REGD +     V +V  NLK HT Y L  V++P
Sbjct: 320 REGDGNYEWTDVARVDSNLKSHTSYLLFAVHLP 352


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/53 (24%), Positives = 30/53 (56%)

Query: 87  TPKILSAAKNTSRDTAEPDYWDNINEIMFSNYANSSFEQTDVFTWKQNKRSIN 139
           +P++ S AK+TS       Y D+++  + S+ A+S+   +  ++ K   +++N
Sbjct: 42  SPQLYSLAKSTSLQEPVRIYGDSVSPAISSSKAHSTSSVSPYYSEKNESQALN 94


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 72  FPIMLTSHDEATPRHTPKIL 91
           FP  ++ H  ATP H PKI+
Sbjct: 317 FPDTISRHGSATPPHPPKIM 336


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 202 WRDTRLSFLGPIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITV-PNKLLR-ISQH 256
           W D     L PIRS   SI+ + R    D+ +  G    +  + + PNK  R I QH
Sbjct: 224 WGDHTDRILSPIRSHDFSIETITRA-DSDSLYVGGSDGCIRLLHILPNKYERIIGQH 279


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 118 YANSSFEQTDVFTWKQNKRSINDAVSKNITSVLENLLKNYENSQLPTHGKGYPTVVQT 175
           Y N S  + D    ++N +  +DA ++++  VL     N      P H    PT   T
Sbjct: 485 YFNQSNVEVDNVELRKNTQPSSDAANRDLYQVLPEKSTNISGFMGPQHQYDIPTAEDT 542


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,628
Number of Sequences: 5004
Number of extensions: 102085
Number of successful extensions: 306
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 6
length of query: 539
length of database: 2,362,478
effective HSP length: 76
effective length of query: 463
effective length of database: 1,982,174
effective search space: 917746562
effective search space used: 917746562
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)