Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000891-TA|BGIBMGA000891-PA|IPR006201|Neurotransmitter-
gated ion-channel, IPR006028|Gamma-aminobutyric acid A receptor,
IPR001390|Gamma-aminobutyric-acid A receptor, alpha subunit,
IPR006202|Neurotransmitter-gated ion-channel ligand-binding,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47940.1 68418.m05922 expressed protein                             34   0.21 
At5g53890.1 68418.m06703 leucine-rich repeat transmembrane prote...    33   0.48 
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    31   2.5  
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    31   2.5  
At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi...    31   2.5  
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p...    30   4.5  
At5g44840.1 68418.m05495 glycoside hydrolase family 28 protein /...    29   5.9  
At5g44830.1 68418.m05494 glycoside hydrolase family 28 protein /...    29   5.9  
At5g07310.1 68418.m00835 AP2 domain-containing transcription fac...    29   5.9  
At2g32290.1 68415.m03947 beta-amylase, putative / 1,4-alpha-D-gl...    29   7.8  

>At5g47940.1 68418.m05922 expressed protein
          Length = 749

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 1   MTSYQNKYCMIVTKGFEFTSLVNKSMSKTRKSAGEGNKASSSSIGSDGHPLIVRL----Q 56
           + S Q+K C +V + + F   V+ S S+  ++ G GN +SSSS+ +   P +++L     
Sbjct: 194 LLSLQDKRCALVDEVYVFADPVDPSESEKEEATGTGN-SSSSSLMAMFMPALLQLSRGKD 252

Query: 57  VQAKGAIYLTTK-NGTFPIMLTSHDE 81
           V+ +  I ++ K N T P+ + + D+
Sbjct: 253 VRKERDIQVSDKSNSTDPVAIGNTDQ 278


>At5g53890.1 68418.m06703 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1036

 Score = 33.1 bits (72), Expect = 0.48
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 86  HTPK--ILSAAKNTSRDTAEPDYWDNINEIMFSNYANSSF-EQTDVFTWKQNKRSINDAV 142
           H PK  ILS AKN  R    PD + N+  ++F + +N+SF + ++     Q+ R+++  +
Sbjct: 350 HCPKMKILSLAKNEFRGKI-PDTFKNLQSLLFLSLSNNSFVDFSETMNVLQHCRNLSTLI 408

Query: 143 -SKN-ITSVLENLLKNYEN 159
            SKN I   + N +  ++N
Sbjct: 409 LSKNFIGEEIPNNVTGFDN 427


>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 235 NGKHSYVHTITVPNKLLRISQHGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSYAY 294
           N  H  V   +  N+ L+I   G  +     +   +C +E +++ +      + +G   Y
Sbjct: 62  NSPHYIVIIGSNRNRRLKIQVDGKSVVDEEASDLCRCSLEFQSYWISIYDGLISIGKGRY 121

Query: 295 SNQQLVYQWQNSQSVNFVPGMTLSQFDLISFPYRN 329
             Q LV++WQ+ +    V  + LS +D     YRN
Sbjct: 122 PFQNLVFKWQDPKPNCNVQYVGLSSWDK-HVGYRN 155


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 235 NGKHSYVHTITVPNKLLRISQHGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSYAY 294
           N  H  V   +  N+ L+I   G  +     +   +C +E +++ +      + +G   Y
Sbjct: 62  NSPHYIVIIGSNRNRRLKIQVDGKSVVDEEASDLCRCSLEFQSYWISIYDGLISIGKGRY 121

Query: 295 SNQQLVYQWQNSQSVNFVPGMTLSQFDLISFPYRN 329
             Q LV++WQ+ +    V  + LS +D     YRN
Sbjct: 122 PFQNLVFKWQDPKPNCNVQYVGLSSWDK-HVGYRN 155


>At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 946

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 136 RSINDAVSKN-ITSVLENLLKNYENSQLPTHGKGYPTVVQ--TNILIRSMGPVSELDMDY 192
           R + D   KN    V  NLL+  + +  PTH  GY  V++      I S+G + E+  D 
Sbjct: 777 RVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDD 836

Query: 193 SMDCYFRQYWRDTRLSFLGPIRSLSLSIKMLERI 226
           +    F   +R   +  L   + L +++++LE +
Sbjct: 837 TAP--FLSVYR-LLIDNLIKAQRLEMALRLLEEV 867


>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
           putative similar to AOP1 [Arabidopsis
           lyrata][GI:16118889]; contains Pfam profile PF03171:
           2OG-Fe(II) oxygenase superfamily domain
          Length = 317

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 10/125 (8%)

Query: 135 KRSINDAVSKNITSVLENLLKNYENSQLPTHGK--GYPTVVQTNILIRSMGPVSELDMDY 192
           ++S+  A+ +     L+  L+N   S+ P HG    YP V     L  SMG + + D+  
Sbjct: 58  RKSVFGALEELFDLPLQTKLRNV--SKKPFHGYVGQYPMVP----LYESMG-IDDSDIAE 110

Query: 193 SMDCYFRQYWRDTRLSFLGPIRSLSLSIKMLERIWRPDTYFYNGKHSYV-HTITVPNKLL 251
            +D +  + W    +SF   I+S S  +  L+   R       G   Y+   +   N LL
Sbjct: 111 KVDAFTEKLWPQGNISFSTTIQSFSKKLSELDITIRRMIMESFGLDKYIDEHLHSTNYLL 170

Query: 252 RISQH 256
           R+ ++
Sbjct: 171 RVMKY 175


>At5g44840.1 68418.m05495 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Persea americana] GI:166951; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 381

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 8   YCMIVTKGFEFTSLVNKSMSKT--RKSAGEGNKASSSSIGSDGHPLIVRLQVQAKGAIYL 65
           Y  ++  G +  ++ + SM+    R + G G+  S  S+G DG   IV   VQ     ++
Sbjct: 198 YDTVIGTGDDCVAINSGSMNINIARMNCGPGHGISVGSVGRDGEESIVE-NVQVTNCTFI 256

Query: 66  TTKNG 70
            T NG
Sbjct: 257 RTDNG 261


>At5g44830.1 68418.m05494 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 332

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 29  TRKSAGEGNKASSSSIGSDGHPLIVRLQVQAKGAIYLTTKNG 70
           TR + G G+  S  S+G DG   IV   VQ     +  T NG
Sbjct: 172 TRMNCGPGHGISVGSLGRDGEESIVE-NVQVTNCTFFRTDNG 212


>At5g07310.1 68418.m00835 AP2 domain-containing transcription
           factor, putative AP2 domain containing
           proteins/transcription factors
          Length = 263

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 88  PKILSAAKNTSRDTAEPDYWDNINEIMFSN 117
           P+    A NTS  T  P+Y+ + N+I +SN
Sbjct: 148 PERAQLASNTSTTTGPPNYYSSNNQIYYSN 177


>At2g32290.1 68415.m03947 beta-amylase, putative /
           1,4-alpha-D-glucan maltohydrolase, putative similar to
           beta-amylase GI:13560977 from [Castanea crenata]
          Length = 577

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 304 QNSQSVNFVPGMTLSQFDLISFPYRNFTFTRREGDFSVLQVSFNLKRHTGYFLIQ---VY 360
           +N+   N VPG T  +F    F Y N T+ + EG+F +   S  L  H    L +   V+
Sbjct: 299 ENAGEYNSVPGET--EF----FEYSNGTYLKEEGNFFLSWYSKKLLLHGDQILDEANKVF 352

Query: 361 VPCILIVV--LSWVSFWIHREVGSGEI 385
           + C L +   +S + +W   E  + E+
Sbjct: 353 LGCKLKIAAKVSGIHWWYKTESHAAEL 379


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,416,513
Number of Sequences: 28952
Number of extensions: 497788
Number of successful extensions: 1297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 10
length of query: 539
length of database: 12,070,560
effective HSP length: 85
effective length of query: 454
effective length of database: 9,609,640
effective search space: 4362776560
effective search space used: 4362776560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)