Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000891-TA|BGIBMGA000891-PA|IPR006201|Neurotransmitter-
gated ion-channel, IPR006028|Gamma-aminobutyric acid A receptor,
IPR001390|Gamma-aminobutyric-acid A receptor, alpha subunit,
IPR006202|Neurotransmitter-gated ion-channel ligand-binding,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
(539 letters)
Database: tribolium
317 sequences; 114,650 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 142 6e-36
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 76 7e-16
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 75 2e-15
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 74 2e-15
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 72 9e-15
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 72 9e-15
S78567-1|AAB34900.1| 141|Tribolium castaneum GABA receptor subu... 69 8e-14
AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve co... 26 0.76
DQ659251-1|ABG47449.1| 366|Tribolium castaneum chitinase 11 pro... 23 7.1
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 142 bits (344), Expect = 6e-36
Identities = 70/201 (34%), Positives = 116/201 (57%), Gaps = 4/201 (1%)
Query: 145 NITSVLENLLKNYENSQLPTHGKGYPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRD 204
NI+++L++ +Y+ P +G G P V + + S+ +SE+ MD+++D YFRQ+W D
Sbjct: 40 NISAILDSFSVSYDKRVRPNYG-GPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTD 98
Query: 205 TRLSF--LGPIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYS 262
RL++ + +LS+ + ++ IW PDT+F N K SY H T N+ +R+ G I S
Sbjct: 99 PRLAYGKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRS 158
Query: 263 MRLTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQW-QNSQSVNFVPGMTLSQFD 321
+RLTI A CPM L+ PMDRQ C + + S+ Y+ + + Y+W + SV ++L QF
Sbjct: 159 IRLTITASCPMNLQYLPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSSEVSLPQFK 218
Query: 322 LISFPYRNFTFTRREGDFSVL 342
++ R + G++S L
Sbjct: 219 VLGHRRRAVEISLTTGNYSRL 239
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 75.8 bits (178), Expect = 7e-16
Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 11/239 (4%)
Query: 149 VLENLLKNYENSQLPTHGKGYPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDTRLS 208
+L NLL Y + P + P V+ + ++ + V E + + + + W D L
Sbjct: 7 LLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLK 66
Query: 209 F----LGPIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMR 264
+ G ++ L ++ ++W+PD YN N +++ +G LY
Sbjct: 67 WNESEYGGVKDLRITPN---KLWKPDVLMYNSADEGFDGTFQTNVVVK--HNGSCLYVPP 121
Query: 265 LTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSQSVNFVPGMTLSQFDLIS 324
K+ C M++ FP D Q C + GS+ Y QL + + +T ++ LI
Sbjct: 122 GIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLNSESGGDLSDFITNGEWYLIG 181
Query: 325 FPYRNFTFTRREGDFSVLQVSFNLK--RHTGYFLIQVYVPCILIVVLSWVSFWIHREVG 381
P + T + V+F +K R T Y+ + VPC+LI ++ + F + + G
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 240
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 74.5 bits (175), Expect = 2e-15
Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 11/239 (4%)
Query: 149 VLENLLKNYENSQLPTHGKGYPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDTRLS 208
+L NLL Y + P + P V+ + ++ + V E + + + + W D L
Sbjct: 7 LLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLK 66
Query: 209 F----LGPIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMR 264
+ G ++ L ++ ++W+PD YN N +++ G LY
Sbjct: 67 WNESEYGGVKDLRITPN---KLWKPDVLMYNSADEGFDGTFQTNVVVK--HGGSCLYVPP 121
Query: 265 LTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSQSVNFVPGMTLSQFDLIS 324
K+ C M++ FP D Q C + GS+ Y QL + + +T ++ LI
Sbjct: 122 GIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLNSESGGDLSDFITNGEWYLIG 181
Query: 325 FPYRNFTFTRREGDFSVLQVSFNLK--RHTGYFLIQVYVPCILIVVLSWVSFWIHREVG 381
P + T + V+F +K R T Y+ + VPC+LI ++ + F + + G
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 240
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 74.1 bits (174), Expect = 2e-15
Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 11/239 (4%)
Query: 149 VLENLLKNYENSQLPTHGKGYPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDTRLS 208
+L NLL Y + P + P V+ + ++ + V E + + + + W D L
Sbjct: 7 LLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLK 66
Query: 209 F----LGPIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMR 264
+ G ++ L ++ ++W+PD YN N +++ +G LY
Sbjct: 67 WNESEYGGVKDLRITPN---KLWKPDVLMYNSADEGFDGTFQTNVVVK--HNGSCLYVPP 121
Query: 265 LTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSQSVNFVPGMTLSQFDLIS 324
K+ C +++ FP D Q C + GS+ Y QL + + +T ++ LI
Sbjct: 122 GIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQLDLVLNSESGGDLSDFITNGEWYLIG 181
Query: 325 FPYRNFTFTRREGDFSVLQVSFNLK--RHTGYFLIQVYVPCILIVVLSWVSFWIHREVG 381
P + T + V+F +K R T Y+ + VPC+LI ++ + F + + G
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 240
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 72.1 bits (169), Expect = 9e-15
Identities = 55/239 (23%), Positives = 99/239 (41%), Gaps = 11/239 (4%)
Query: 149 VLENLLKNYENSQLPTHGKGYPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDTRLS 208
+L NLL Y + P + P V+ + ++ + V E + + + W D L
Sbjct: 7 LLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWNDYNLK 66
Query: 209 F----LGPIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMR 264
+ G ++ L ++ ++W+PD YN N +++ G LY
Sbjct: 67 WNESEYGGVKDLRITPN---KLWKPDVLMYNSADEGFDGTFQTNVVVK--HGGSCLYVPP 121
Query: 265 LTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSQSVNFVPGMTLSQFDLIS 324
K+ C M++ FP D Q C + GS+ Y QL + + +T ++ LI
Sbjct: 122 GIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLNSESGGDLSDFITNGEWYLIG 181
Query: 325 FPYRNFTFTRREGDFSVLQVSFNLK--RHTGYFLIQVYVPCILIVVLSWVSFWIHREVG 381
P + T + V+F +K R T Y+ + VPC+LI ++ + F + + G
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 240
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 72.1 bits (169), Expect = 9e-15
Identities = 55/239 (23%), Positives = 99/239 (41%), Gaps = 11/239 (4%)
Query: 149 VLENLLKNYENSQLPTHGKGYPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDTRLS 208
+L NLL Y + P + P V+ + ++ + V E + + + W D L
Sbjct: 7 LLNNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWNDYNLK 66
Query: 209 F----LGPIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQHGDILYSMR 264
+ G ++ L ++ ++W+PD YN N +++ G LY
Sbjct: 67 WNESEYGGVKDLRITPN---KLWKPDVLMYNSADEGFDGTFQTNVVVK--HGGSCLYVPP 121
Query: 265 LTIKAKCPMELRNFPMDRQSCPLILGSYAYSNQQLVYQWQNSQSVNFVPGMTLSQFDLIS 324
K+ C M++ FP D Q C + GS+ Y QL + + +T ++ LI
Sbjct: 122 GIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLNSESGGDLSDFITNGEWYLIG 181
Query: 325 FPYRNFTFTRREGDFSVLQVSFNLK--RHTGYFLIQVYVPCILIVVLSWVSFWIHREVG 381
P + T + V+F +K R T Y+ + VPC+LI ++ + F + + G
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 240
>S78567-1|AAB34900.1| 141|Tribolium castaneum GABA receptor subunit
protein.
Length = 141
Score = 68.9 bits (161), Expect = 8e-14
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 291 SYAYSNQQLVYQW-QNSQSVNFVPGMTLSQFDLISFPYRNFTFTRREGDFSVLQVSFNLK 349
S+ Y+ + + Y+W + SV ++L QF ++ R + G++S L
Sbjct: 5 SFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFV 64
Query: 350 RHTGYFLIQVYVPCILIVVLSWVSFWIHREVGSGEIVI 387
R GY+LIQ+Y+P LIV++SWVSFW++R + +
Sbjct: 65 RSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVAL 102
>AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve cord
defective protein protein.
Length = 168
Score = 25.8 bits (54), Expect = 0.76
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 425 SMPSQSSNPTTSDNLETEQPVAVRLTMERTTQTET-RVPRWRQLLYCLAG----DDRYRR 479
++PS +SNP S+ E T Q + R R++L+ A + R+R+
Sbjct: 2 NLPSSASNPAVSERDPDEDNSEDSKDPHLTDQQASGHKKRKRRVLFSKAQTYELERRFRQ 61
Query: 480 QRQREAGSRGHINSV 494
QR A R H+ S+
Sbjct: 62 QRYLSAPEREHLASI 76
>DQ659251-1|ABG47449.1| 366|Tribolium castaneum chitinase 11
protein.
Length = 366
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 336 EGDFSVLQVSFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIH 377
EG F ++ NL H Y + V L ++ SW +H
Sbjct: 40 EGSFKPQNINANLCTHVHYAFLGVNSDGTLKILDSWNEIDLH 81
Database: tribolium
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 114,650
Number of sequences in database: 317
Lambda K H
0.319 0.133 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,506
Number of Sequences: 317
Number of extensions: 5176
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 10
length of query: 539
length of database: 114,650
effective HSP length: 60
effective length of query: 479
effective length of database: 95,630
effective search space: 45806770
effective search space used: 45806770
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)
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