Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000891-TA|BGIBMGA000891-PA|IPR006201|Neurotransmitter-
gated ion-channel, IPR006028|Gamma-aminobutyric acid A receptor,
IPR001390|Gamma-aminobutyric-acid A receptor, alpha subunit,
IPR006202|Neurotransmitter-gated ion-channel ligand-binding,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 31 3.1
12_02_1242 + 27292900-27293309,27294806-27295103 30 4.0
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 30 4.0
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 7.1
04_01_0248 + 3254493-3254599,3258414-3258681,3260797-3261074,326... 29 9.3
02_05_0266 + 27280592-27281668 29 9.3
01_04_0121 - 16307839-16308315,16308394-16308793,16308978-163094... 29 9.3
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 30.7 bits (66), Expect = 3.1
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 137 SINDAVSKNITSVLENLLKNYENSQLPTHGKGYPTVVQTNILIRSMGPVSELDMDYSMDC 196
S N+ +IT + NL +NY +P+ G T +Q + I S EL +
Sbjct: 93 SFNNRTVCHITKL--NLQQNYLTGPVPSF-IGKLTFMQY-LGIGSNNFTGELPEELGNLT 148
Query: 197 YFRQYWRDTRLSFLGPIRSLSLSIKMLERIWRPDTYFYNGKHSYVHTIT 245
Q + D+ F GP S +K LE++W D F Y+ T+T
Sbjct: 149 KLEQLYIDSS-GFSGPFPSTLSKLKNLEKLWASDNDFTGKIPDYLGTLT 196
>12_02_1242 + 27292900-27293309,27294806-27295103
Length = 235
Score = 30.3 bits (65), Expect = 4.0
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 132 KQNKRSINDAVSKNITSVLENLLKNYENSQLPTHGKGYPTVVQTNILIRSMGPVSELDMD 191
++ R++NDA+S+N N +++ E S++ T V+ I+IR+M P++E +
Sbjct: 137 RRKNRTVNDAISEN------NWIRDIEISRI-TEASHLQQYVRLWIVIRNMRPLNENQDN 189
Query: 192 YSMDCYFRQYWRDT---RLSFLGPIRSL 216
+ + + RL FLG RS+
Sbjct: 190 IRWNLTANEQYSTKSAYRLQFLGAARSI 217
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 30.3 bits (65), Expect = 4.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 475 DRYRRQRQREAGSRGHINSVSHIDRAARVLFPAS 508
DR R++R +G GH+ +V + RA R PAS
Sbjct: 228 DRRRKKRSVHSGDEGHVLAVEGVPRATRKGRPAS 261
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.5 bits (63), Expect = 7.1
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 421 TNNLSMPS-----QSSNPTTSDNLETEQPVAVRLTMERTTQTETRVPRWRQLLYC---LA 472
+NN MP+ Q S+PTTS NL QP A R ++++ V R Q L +
Sbjct: 821 SNNNMMPAPQSTNQLSSPTTSSNLPPMQPPATRPQEPEPNESQSSVQRILQDLMMSPQMN 880
Query: 473 GDDRYRRQRQREAGSRGHINSVS 495
G + +R G +N V+
Sbjct: 881 GIGQLGNDMKRPNGLTSSVNGVN 903
>04_01_0248 +
3254493-3254599,3258414-3258681,3260797-3261074,
3261708-3261711,3263037-3263118,3263196-3263220,
3263498-3263599,3264123-3264306,3264902-3265068,
3265233-3265866
Length = 616
Score = 29.1 bits (62), Expect = 9.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 2 TSYQNKYCMIVTKGFEFTSLVNKSMSKTRKSAGEGNKASSSSIGSD 47
T N +C ++T F + + NK + + K G G+K + D
Sbjct: 334 TLMMNSFCSVLTPCFTYLNPTNKQLGRLFKKLGYGDKGDTGCYSWD 379
>02_05_0266 + 27280592-27281668
Length = 358
Score = 29.1 bits (62), Expect = 9.3
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 471 LAGDDRYRRQRQREAGSRGHINSVSHIDRAARVLFPASFALLNLFYWMIYAFSSDDFAWS 530
L + RR+R+ A G ++ D AA +L P + A+ L + +DD AW
Sbjct: 82 LTAEAHRRRRRRLYASPHGWTLAIDPTDLAASLLHPFTGAVCALPPLPAFFAETDDLAWD 141
Query: 531 DNP 533
+P
Sbjct: 142 WSP 144
>01_04_0121 -
16307839-16308315,16308394-16308793,16308978-16309452,
16309936-16310353
Length = 589
Score = 29.1 bits (62), Expect = 9.3
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 357 IQVYVPCILIVVLSWVSFW--IHREVGSGEIVIDDSEWEELIEE 398
+++ +PC+ + VL W + SGE+ ID S+W +++ E
Sbjct: 213 LRLLLPCVGMTVLDMADKWRAMAEADKSGEVEIDVSDWFQVVTE 256
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,366
Number of Sequences: 37544
Number of extensions: 592458
Number of successful extensions: 1530
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1525
Number of HSP's gapped (non-prelim): 9
length of query: 539
length of database: 14,793,348
effective HSP length: 86
effective length of query: 453
effective length of database: 11,564,564
effective search space: 5238747492
effective search space used: 5238747492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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