Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000891-TA|BGIBMGA000891-PA|IPR006201|Neurotransmitter-
gated ion-channel, IPR006028|Gamma-aminobutyric acid A receptor,
IPR001390|Gamma-aminobutyric-acid A receptor, alpha subunit,
IPR006202|Neurotransmitter-gated ion-channel ligand-binding,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
(539 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47940.1 68418.m05922 expressed protein 34 0.21
At5g53890.1 68418.m06703 leucine-rich repeat transmembrane prote... 33 0.48
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 31 2.5
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 31 2.5
At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi... 31 2.5
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p... 30 4.5
At5g44840.1 68418.m05495 glycoside hydrolase family 28 protein /... 29 5.9
At5g44830.1 68418.m05494 glycoside hydrolase family 28 protein /... 29 5.9
At5g07310.1 68418.m00835 AP2 domain-containing transcription fac... 29 5.9
At2g32290.1 68415.m03947 beta-amylase, putative / 1,4-alpha-D-gl... 29 7.8
>At5g47940.1 68418.m05922 expressed protein
Length = 749
Score = 34.3 bits (75), Expect = 0.21
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 1 MTSYQNKYCMIVTKGFEFTSLVNKSMSKTRKSAGEGNKASSSSIGSDGHPLIVRL----Q 56
+ S Q+K C +V + + F V+ S S+ ++ G GN +SSSS+ + P +++L
Sbjct: 194 LLSLQDKRCALVDEVYVFADPVDPSESEKEEATGTGN-SSSSSLMAMFMPALLQLSRGKD 252
Query: 57 VQAKGAIYLTTK-NGTFPIMLTSHDE 81
V+ + I ++ K N T P+ + + D+
Sbjct: 253 VRKERDIQVSDKSNSTDPVAIGNTDQ 278
>At5g53890.1 68418.m06703 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1036
Score = 33.1 bits (72), Expect = 0.48
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 86 HTPK--ILSAAKNTSRDTAEPDYWDNINEIMFSNYANSSF-EQTDVFTWKQNKRSINDAV 142
H PK ILS AKN R PD + N+ ++F + +N+SF + ++ Q+ R+++ +
Sbjct: 350 HCPKMKILSLAKNEFRGKI-PDTFKNLQSLLFLSLSNNSFVDFSETMNVLQHCRNLSTLI 408
Query: 143 -SKN-ITSVLENLLKNYEN 159
SKN I + N + ++N
Sbjct: 409 LSKNFIGEEIPNNVTGFDN 427
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 30.7 bits (66), Expect = 2.5
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 235 NGKHSYVHTITVPNKLLRISQHGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSYAY 294
N H V + N+ L+I G + + +C +E +++ + + +G Y
Sbjct: 62 NSPHYIVIIGSNRNRRLKIQVDGKSVVDEEASDLCRCSLEFQSYWISIYDGLISIGKGRY 121
Query: 295 SNQQLVYQWQNSQSVNFVPGMTLSQFDLISFPYRN 329
Q LV++WQ+ + V + LS +D YRN
Sbjct: 122 PFQNLVFKWQDPKPNCNVQYVGLSSWDK-HVGYRN 155
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 30.7 bits (66), Expect = 2.5
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 235 NGKHSYVHTITVPNKLLRISQHGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSYAY 294
N H V + N+ L+I G + + +C +E +++ + + +G Y
Sbjct: 62 NSPHYIVIIGSNRNRRLKIQVDGKSVVDEEASDLCRCSLEFQSYWISIYDGLISIGKGRY 121
Query: 295 SNQQLVYQWQNSQSVNFVPGMTLSQFDLISFPYRN 329
Q LV++WQ+ + V + LS +D YRN
Sbjct: 122 PFQNLVFKWQDPKPNCNVQYVGLSSWDK-HVGYRN 155
>At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 946
Score = 30.7 bits (66), Expect = 2.5
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 136 RSINDAVSKN-ITSVLENLLKNYENSQLPTHGKGYPTVVQ--TNILIRSMGPVSELDMDY 192
R + D KN V NLL+ + + PTH GY V++ I S+G + E+ D
Sbjct: 777 RVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDD 836
Query: 193 SMDCYFRQYWRDTRLSFLGPIRSLSLSIKMLERI 226
+ F +R + L + L +++++LE +
Sbjct: 837 TAP--FLSVYR-LLIDNLIKAQRLEMALRLLEEV 867
>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
putative similar to AOP1 [Arabidopsis
lyrata][GI:16118889]; contains Pfam profile PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 317
Score = 29.9 bits (64), Expect = 4.5
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 135 KRSINDAVSKNITSVLENLLKNYENSQLPTHGK--GYPTVVQTNILIRSMGPVSELDMDY 192
++S+ A+ + L+ L+N S+ P HG YP V L SMG + + D+
Sbjct: 58 RKSVFGALEELFDLPLQTKLRNV--SKKPFHGYVGQYPMVP----LYESMG-IDDSDIAE 110
Query: 193 SMDCYFRQYWRDTRLSFLGPIRSLSLSIKMLERIWRPDTYFYNGKHSYV-HTITVPNKLL 251
+D + + W +SF I+S S + L+ R G Y+ + N LL
Sbjct: 111 KVDAFTEKLWPQGNISFSTTIQSFSKKLSELDITIRRMIMESFGLDKYIDEHLHSTNYLL 170
Query: 252 RISQH 256
R+ ++
Sbjct: 171 RVMKY 175
>At5g44840.1 68418.m05495 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Persea americana] GI:166951; contains
PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 381
Score = 29.5 bits (63), Expect = 5.9
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 8 YCMIVTKGFEFTSLVNKSMSKT--RKSAGEGNKASSSSIGSDGHPLIVRLQVQAKGAIYL 65
Y ++ G + ++ + SM+ R + G G+ S S+G DG IV VQ ++
Sbjct: 198 YDTVIGTGDDCVAINSGSMNINIARMNCGPGHGISVGSVGRDGEESIVE-NVQVTNCTFI 256
Query: 66 TTKNG 70
T NG
Sbjct: 257 RTDNG 261
>At5g44830.1 68418.m05494 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 332
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 29 TRKSAGEGNKASSSSIGSDGHPLIVRLQVQAKGAIYLTTKNG 70
TR + G G+ S S+G DG IV VQ + T NG
Sbjct: 172 TRMNCGPGHGISVGSLGRDGEESIVE-NVQVTNCTFFRTDNG 212
>At5g07310.1 68418.m00835 AP2 domain-containing transcription
factor, putative AP2 domain containing
proteins/transcription factors
Length = 263
Score = 29.5 bits (63), Expect = 5.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 88 PKILSAAKNTSRDTAEPDYWDNINEIMFSN 117
P+ A NTS T P+Y+ + N+I +SN
Sbjct: 148 PERAQLASNTSTTTGPPNYYSSNNQIYYSN 177
>At2g32290.1 68415.m03947 beta-amylase, putative /
1,4-alpha-D-glucan maltohydrolase, putative similar to
beta-amylase GI:13560977 from [Castanea crenata]
Length = 577
Score = 29.1 bits (62), Expect = 7.8
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 304 QNSQSVNFVPGMTLSQFDLISFPYRNFTFTRREGDFSVLQVSFNLKRHTGYFLIQ---VY 360
+N+ N VPG T +F F Y N T+ + EG+F + S L H L + V+
Sbjct: 299 ENAGEYNSVPGET--EF----FEYSNGTYLKEEGNFFLSWYSKKLLLHGDQILDEANKVF 352
Query: 361 VPCILIVV--LSWVSFWIHREVGSGEI 385
+ C L + +S + +W E + E+
Sbjct: 353 LGCKLKIAAKVSGIHWWYKTESHAAEL 379
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.133 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,416,513
Number of Sequences: 28952
Number of extensions: 497788
Number of successful extensions: 1297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 10
length of query: 539
length of database: 12,070,560
effective HSP length: 85
effective length of query: 454
effective length of database: 9,609,640
effective search space: 4362776560
effective search space used: 4362776560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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