Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000890-TA|BGIBMGA000890-PA|IPR000342|Regulator of G
protein signalling, IPR001683|Phox-like, IPR003114|PX-associated,
IPR013937|Sorting nexin, C-terminal
         (844 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    30   0.068
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 30.3 bits (65), Expect = 0.068
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 506 QDLHRKLRPLCSELKNLE---LPSNSFKFLFGKNDKNSLDKAKTLIQKYLEFVLEDDRLN 562
           + +  +L+ +  EL  LE   + +N +   F   DK+ LDK  TLI  Y+E V E   +N
Sbjct: 856 EKIAEELKIVPEELVPLEGNLMINNKYALKFFPFDKHILDKLPTLISNYIEAVKEGKFMN 915


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 68  LMREILACKILQPAIDLVTEPDYINQKIIQYLEAQKEVNAMHIRT 112
           L+  ++ C I  P++   T P +++ ++I    A   VNA   +T
Sbjct: 6   LLSLLITCLICSPSVHCGTRPSFVSDEMI--ATAASVVNACQTQT 48


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 580 QEDMPKKNKFSLSTLFKSASSEATNRSSQEKEAFNHMSADEDEI 623
           +E  PKK + + +T     SS    + S+EK   +H    E  +
Sbjct: 787 KETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSV 830


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 452 RWRASVHSADVIDESKPPQFVIVVH 476
           +W A + S  + +E + PQF ++ H
Sbjct: 169 KWNAGLQSVGISNEVELPQFRVLGH 193


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,649
Number of Sequences: 429
Number of extensions: 9657
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 6
length of query: 844
length of database: 140,377
effective HSP length: 64
effective length of query: 780
effective length of database: 112,921
effective search space: 88078380
effective search space used: 88078380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)