GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000889-TA|BGIBMGA000889-PA|undefined
         (131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       29   0.24 
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    27   0.95 

>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 21  IFDGCLNLAYDIVKISSHIYKFRTTTFGPS-------VYRANITRSVEDLPLCRLASQKG 73
           + D   +L YD+  I +  +K R +  GP+       +Y +N+TR V D     L  Q+ 
Sbjct: 52  LVDDLEHLGYDVKLIQNPEFKSRPSKEGPNQALMKNPLYVSNVTRQVRDAVQRELEQQRV 111

Query: 74  IQNI 77
           + NI
Sbjct: 112 VVNI 115


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.1 bits (57), Expect = 0.95
 Identities = 14/65 (21%), Positives = 31/65 (47%)

Query: 67  RLASQKGIQNIIRAIQLTNMTAVWCSDRAGAGFNYAINCSMQFSLEYVVGEGSLKPVNVY 126
           + A Q    N+   ++L++  A W +    + F+Y ++  +      V+ E S+   +V 
Sbjct: 6   KAAPQIAPTNLPTGVRLSSKDARWITSSGSSSFDYYLSGGIPMKSLLVIEEDSMDYASVL 65

Query: 127 LRYKA 131
           L++ A
Sbjct: 66  LKFFA 70


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,289
Number of Sequences: 5004
Number of extensions: 19386
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 2
length of query: 131
length of database: 2,362,478
effective HSP length: 66
effective length of query: 65
effective length of database: 2,032,214
effective search space: 132093910
effective search space used: 132093910
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 49 (23.8 bits)