GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000889-TA|BGIBMGA000889-PA|undefined
         (131 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0343 + 9163976-9165220                                           29   1.2  
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425...    26   8.6  

>02_02_0343 + 9163976-9165220
          Length = 414

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 59  SVEDLPLCRLASQKGIQNIIRAIQLTNMTAVWCSDRAGAGFNYAINCSMQ 108
           S+ +L +CR +S + +  +     LT++T + C D    GF+  I  +++
Sbjct: 196 SLRELSICRESSMQSMALLSNLTSLTHLTLLECEDLTVDGFDPLITLNLK 245


>03_01_0575 +
           4247431-4247489,4248475-4248547,4248792-4249229,
           4252122-4253339
          Length = 595

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 26  LNLAYDIVKISSHIYKFRTTTFGPSV 51
           L+++ D+V++  H  K   TT GP V
Sbjct: 414 LSISRDLVEVGGHALKTNITTLGPLV 439


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,657,021
Number of Sequences: 37544
Number of extensions: 126099
Number of successful extensions: 282
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 2
length of query: 131
length of database: 14,793,348
effective HSP length: 74
effective length of query: 57
effective length of database: 12,015,092
effective search space: 684860244
effective search space used: 684860244
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)