GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000889-TA|BGIBMGA000889-PA|undefined
         (131 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           28   2.2  
SB_37258| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.7  

>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 53   RANITRSVEDLPLCRLASQKGIQNIIRAIQLTNMTAVWCSDRA 95
            R N+   V+D+P C  + +    + + +  +T   AVWC+D+A
Sbjct: 1009 RTNMVYRVQDMPGC--SDELDFTSSVSSGAVTRNHAVWCADQA 1049


>SB_37258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 51  VYRANITRSVEDLPLCRLASQKGIQNIIRAI 81
           +YR    RS E LPL RL    GI  I+RA+
Sbjct: 84  LYRRCSQRSAE-LPLYRLPRGSGIHQIVRAL 113


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 2   VNKWSRRGVMWRVAIIQRRIFDGCLNL 28
           ++ +++RG+ W + +  RR  DG L L
Sbjct: 592 IDWFAKRGIPWHITVATRRREDGSLEL 618


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,055,602
Number of Sequences: 59808
Number of extensions: 135859
Number of successful extensions: 281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 3
length of query: 131
length of database: 16,821,457
effective HSP length: 75
effective length of query: 56
effective length of database: 12,335,857
effective search space: 690807992
effective search space used: 690807992
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)