GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000889-TA|BGIBMGA000889-PA|undefined
         (131 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127809-1|BAC87146.1|  306|Homo sapiens protein ( Homo sapiens ...    29   4.8  

>AK127809-1|BAC87146.1|  306|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45910 fis, clone PEBLM2003935. ).
          Length = 306

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 7   RRGVMWRVAIIQRRIFDGCLNLAYDIVKISSHIYKFRTTTFGPSVYRANIT 57
           +R +++   ++   +F GCL L   ++K    + + R  +F    +R N+T
Sbjct: 167 KRWMVYLCLLVVTSLFLGCLGLTVTLIKYQELMEELRMLSFQQMTWRTNMT 217


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.327    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,850,530
Number of Sequences: 224733
Number of extensions: 603350
Number of successful extensions: 1090
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 1
length of query: 131
length of database: 73,234,838
effective HSP length: 82
effective length of query: 49
effective length of database: 54,806,732
effective search space: 2685529868
effective search space used: 2685529868
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)