GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000889-TA|BGIBMGA000889-PA|undefined
         (131 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96047-5|CAB09415.1|  379|Caenorhabditis elegans Hypothetical pr...    27   4.3  

>Z96047-5|CAB09415.1|  379|Caenorhabditis elegans Hypothetical
           protein DY3.6 protein.
          Length = 379

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/56 (26%), Positives = 20/56 (35%)

Query: 9   GVMWRVAIIQRRIFDGCLNLAYDIVKISSHIYKFRTTTFGPSVYRANITRSVEDLP 64
           G  WR A    + + GC  L  D++ I  H       + G    R     SV   P
Sbjct: 314 GKSWRQAFFDLKKYHGCRELYADLIHICCHCKALFWKSLGHPCVRETTAPSVRVTP 369


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,952
Number of Sequences: 27539
Number of extensions: 103836
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 1
length of query: 131
length of database: 12,573,161
effective HSP length: 74
effective length of query: 57
effective length of database: 10,535,275
effective search space: 600510675
effective search space used: 600510675
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)