GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000889-TA|BGIBMGA000889-PA|undefined
         (131 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02965.1 68414.m00266 hypothetical protein                          28   1.8  
At3g27910.1 68416.m03482 kelch repeat-containing protein contain...    27   3.1  
At3g58530.1 68416.m06524 F-box family protein-related contains w...    27   5.4  
At2g46470.1 68415.m05783 OXA1 protein, putative similar to Oxa1 ...    26   9.4  

>At1g02965.1 68414.m00266 hypothetical protein
          Length = 162

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 17  IQRRIFDGCLNLAYDIVKISSHIYKFRTTTFGPSVYRANITRSVEDLPLCRLASQK 72
           +++ I  G LN A D   ++       +T   P +Y+  +T + EDLP   LA  K
Sbjct: 99  LEKLIGCGALNYARDPGDVTVEATILTSTDLMPKIYQNCVTGNAEDLPEEVLAKNK 154


>At3g27910.1 68416.m03482 kelch repeat-containing protein contains
           Pfam profile PF01344: Kelch motif
          Length = 294

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 12/94 (12%)

Query: 5   WSRRGVMWRVAIIQRRIFDGCL-NLAYDIVKISSHIYKFRTTTFGPSVYRANITRSVEDL 63
           W R  ++ R  ++   + D  L    +D VK    IY+ R   + PSV   +  + +ED+
Sbjct: 165 WERDFLLDRDWVVGSCVIDNMLYTFGFDSVK---RIYRVRV--YDPSVRVWSFVKGIEDI 219

Query: 64  PL------CRLASQKGIQNIIRAIQLTNMTAVWC 91
           P        R+A+  G   I+  +     T +WC
Sbjct: 220 PKMDGTLGSRMANHGGKLVILLNLDKNGGTELWC 253


>At3g58530.1 68416.m06524 F-box family protein-related contains weak
           similarity to F-box protein FBL2 (GI:6010699) [Rattus
           norvegicus]
          Length = 353

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 70  SQKGIQNIIRAIQLTNMTAVWCSDRAGAGFNYAIN-C-SMQF-SLEYVVG 116
           S +GI +I +  +L ++   WC     AG N   N C S++F SL  +VG
Sbjct: 254 SDEGIGHIAKCNKLESLNLTWCVRITDAGVNTIANSCTSLEFLSLFGIVG 303


>At2g46470.1 68415.m05783 OXA1 protein, putative similar to Oxa1
          protein [Arabidopsis thaliana] GI:10176922
          Length = 431

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 8  RGVMWRVAIIQRRIFDGCLNLAYD 31
          RG+  RV ++QRR++  C +L  D
Sbjct: 6  RGITKRVNLLQRRVYPSCGHLIRD 29


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.137    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,908
Number of Sequences: 28952
Number of extensions: 100911
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 4
length of query: 131
length of database: 12,070,560
effective HSP length: 74
effective length of query: 57
effective length of database: 9,928,112
effective search space: 565902384
effective search space used: 565902384
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)