Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000888-TA|BGIBMGA000888-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2, IPR003961|Fibronectin,
type III, IPR013098|Immunoglobulin I-set, IPR013151|Immunoglobulin,
IPR007110|Immunoglobulin-like, IPR008957|Fibronectin, type III-like
fold
         (1207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    32   0.42 
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      29   3.9  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    29   3.9  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    29   5.2  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    29   5.2  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    28   6.9  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    28   9.1  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    28   9.1  

>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 522 LSWSQNNKIGSSSILGYQVEVFSRETLSGNNTPRNSRGWVVIARRVHQTHYVVKSLIPGI 581
           L+ S   +I     L   + +   E L  +N    S  + V +   H  H V+ S  PG 
Sbjct: 301 LTVSSTQRISRPPSLQKSITMVGVEPLYQSNGNEKSSKYNVFSESAHGNHQVL-SFSPGS 359

Query: 582 TYMFIVRTENSHGLSGPSPVSDSVTVGDDSNSLWEGT 618
           +  FI +         PSP+S + T  +D+N+L E T
Sbjct: 360 SPSFIEQ---------PSPISPTSTTSEDTNTLEEDT 387


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 1014 WF-PPGGKNVDTFDNRYGADEELYPASNGGYYNRNVYSEKY-----FQGHPNVLKF 1063
            W+  P  K+   FD R+G D      SN   Y+RN + +K      FQ +P+   F
Sbjct: 486  WYNSPYPKSSHHFDERHGGDRHEKNLSNSRRYSRNKFHKKKQSSGPFQYYPDAFSF 541


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 46/169 (27%), Positives = 64/169 (37%), Gaps = 16/169 (9%)

Query: 332 RTIIFPGMSRDKYHATAVFDGVTVLTINDTDKNDSRNTIVCSAVNYAGSSFVRGKLTVTS 391
           R  +FP  +   Y+ T   +G      N T  N +  T + +A N   S+F       T+
Sbjct: 190 RPTVFPYTTISHYNITNATNGTYC---NGT--NGTNFTCIVNASNATNSTFWLNGTNSTN 244

Query: 392 DDDRPPPIITNGPSNQTLPIKSMAVFPCTAICTPEPIIAWYFEGEALIQNHRRNVTNDGT 451
             +      T   S   LP  S ++   T+  T    I      EAL  N   N T+D T
Sbjct: 245 GTNSTNSTSTTSHSLTKLPTSSKSL--TTSKTTASGHITKGVM-EALSTNDTTNTTDDAT 301

Query: 452 LVLKDLDKSDSGTYTCVASSRHGKYVWSGALLVDSP--INPNIHFFRAA 498
               D   S S + +  +SS       S A LV  P  I+  I FF  A
Sbjct: 302 NTTSDSSSSSSASASSSSSSS------SAASLVSQPVGISAVIAFFAVA 344


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 473 HGKYVWSGALLVDSPINPNIHFFRAA-DVSSL----PGPPTKPITHNVTDTSVTLSWSQN 527
           H   + +G+L+ D+P   +I+ F ++  +++L       P  P++  V D S T+S +  
Sbjct: 107 HTNRLGTGSLIEDAPPTQSIYDFSSSRQINALNVGQSSSPFSPVSEKVYDPSFTMSGAPQ 166

Query: 528 NKIGSSSILGYQVEV 542
           +   S  + G+  E+
Sbjct: 167 DSNTSVIVFGFPPEL 181


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 1031 ADEELYPASNGGYYNRNVYSE-KYFQGHPNVLKFYDLPSMEKSQKAQLRYNQSLEDRKAD 1089
            A + + P  +G   N +   E ++ Q   N++K  +L S     + QL   QSL +    
Sbjct: 1590 ASQLIIPNFDGSITNYSGEEETEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAES 1649

Query: 1090 KNSKADVTQS-LIGR 1103
              SKA+ +++ L GR
Sbjct: 1650 SLSKAERSKNYLTGR 1664


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 1080 NQSLEDRKADKNSKADVTQSLIGRTYGISSRKNSESETTYRAFGEFESDEESYDHNGGYD 1139
            + S  D+K D +      +   G  +G S+ +N E E+   A  E E+DEES        
Sbjct: 53   SMSQNDKKKDSSLNESEDEDFAG--FGESASENDELES---AESEAENDEESSSQKSNSK 107

Query: 1140 ELQAMQSQRQR 1150
            E  A + + Q+
Sbjct: 108  ESHAQRKKLQK 118


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
            eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 1084 EDRKADKNSKADVTQSLIGRTYGISSRKNSESETTYRAFGEFESDEES--YDHNGGYDEL 1141
            ED ++D  S  +  ++       +S    SESE+   +  E ES+EES   + +G    L
Sbjct: 79   EDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESERSGPSSFL 138

Query: 1142 QAMQSQRQRP 1151
            +  + +  +P
Sbjct: 139  KKPEKEEAKP 148


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 525 SQNNKIGSSSILGYQVEVFSRETLSGNNTPRNSRGWVVIARRVHQTHY 572
           S  N++G S +L       +   L   NTP    G +   R++H TH+
Sbjct: 458 SMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHW 505


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,832,039
Number of Sequences: 5004
Number of extensions: 265039
Number of successful extensions: 656
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 11
length of query: 1207
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1126
effective length of database: 1,957,154
effective search space: 2203755404
effective search space used: 2203755404
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)