Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000888-TA|BGIBMGA000888-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2, IPR003961|Fibronectin,
type III, IPR013098|Immunoglobulin I-set, IPR013151|Immunoglobulin,
IPR007110|Immunoglobulin-like, IPR008957|Fibronectin, type III-like
fold
(1207 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0123 - 1864489-1864506,1864717-1865130 34 0.60
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058... 33 1.1
06_02_0069 - 11126235-11127538,11128361-11128421 33 1.4
12_02_1112 + 26162188-26162877,26163263-26163634 32 2.4
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243... 32 2.4
08_02_0429 + 17049775-17049813,17049885-17050547 31 7.4
05_06_0185 - 26201013-26201429,26201537-26201695,26201774-262026... 31 7.4
05_02_0066 - 6284265-6284600,6284671-6284773,6285262-6285380 31 7.4
04_03_0456 + 16096467-16096585,16096687-16096965,16097087-160971... 31 7.4
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 30 9.8
01_06_1539 + 38107108-38109649,38110563-38110915 30 9.8
>09_01_0123 - 1864489-1864506,1864717-1865130
Length = 143
Score = 34.3 bits (75), Expect = 0.60
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 1051 EKYFQGHPNVLKFYDLP--SMEKS----QKAQLRYNQSLEDRKADKNSKADVTQSLIGRT 1104
E+ Q +PN F P S E+S + ++ + S +D ADK+S+ ++ SL
Sbjct: 2 ERSSQLNPNATPFVPPPRSSFEESLSGRKASEKQVGDSEKDETADKSSEYELPDSLSLDD 61
Query: 1105 YGISSRK-NSESETTYRAFGEFESDEESYDHNGGYDELQAMQS 1146
YG S K N +E++ + D Y+ NG + L ++S
Sbjct: 62 YGESLGKLNISAESSSKGAASTALDPSHYEENGVDNHLAVVES 104
>04_04_1393 -
33204699-33204806,33204927-33205164,33205581-33205825,
33206229-33206339,33206645-33206743,33207684-33207731,
33207882-33207999,33208085-33208115,33208700-33208806,
33209644-33209725,33210010-33210104,33210579-33210664,
33211074-33211195,33211613-33211824,33212362-33212510,
33212755-33212982
Length = 692
Score = 33.5 bits (73), Expect = 1.1
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 498 ADVSSLPGP---PTKPITHNVTDTSVTLSWSQNNKIGSSSILGYQVEVFSRE----TLSG 550
A +SS+P P P P + V S+ QN S S + E + +E L G
Sbjct: 159 AQLSSVPRPGSLPRLPSGGILIQRPVGWSYYQNAVTSSYSFAWWDWERWEKEIDWMALQG 218
Query: 551 NNTPRNSRGWVVIARRVHQTHYVVKS----LIPGITYMFIVRTENSHGLSGPSPVS 602
N P G I ++V Q + + KS G ++ R N HG GP P S
Sbjct: 219 INLPLAFTGQEAIWQKVFQRYNISKSDLDDFFGGPAFLAWSRMANMHGWGGPLPQS 274
>06_02_0069 - 11126235-11127538,11128361-11128421
Length = 454
Score = 33.1 bits (72), Expect = 1.4
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 1043 YYNRNVYSEKYFQGHPNVLKFYDLPSMEKSQKAQLRYNQSLEDRKADKNSKADVTQSLIG 1102
Y N V Y+ GH + + +M+ +K Y S E DK K + ++
Sbjct: 296 YDNPAVSRHVYYDGHNDKYMVLNYEAMKLKKKTSDLYQHS-EVNGIDKKPKLKLAKNKFS 354
Query: 1103 RT-YGISSRKNSESETT------YRAFGEFESDEESYDHNGGYD 1139
R+ YG + + Y FG E E +H+GGYD
Sbjct: 355 RSIYGNLAHGHDHVHLAKKKFSYYYTFGNPEDGHEHANHHGGYD 398
>12_02_1112 + 26162188-26162877,26163263-26163634
Length = 353
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 250 KVLDDGSLRLDNVILADEGEYSCEAENSVGAVSASGYLTVYDPPSINLSPNSVNVESGNV 309
++ D S R+ +++ D+ E N + + S+ G + ++D I + E+
Sbjct: 256 RIEDAHSTRVKGIVVFDDKNDGSELCNLIASASSDGIIRIWDARMIAKEKTTPLAEANTK 315
Query: 310 ARFTCTA 316
AR TC A
Sbjct: 316 ARLTCLA 322
>03_06_0495 + 34323082-34323173,34323600-34323742,34324265-34324315,
34324405-34324626,34324731-34324833,34325156-34325552,
34326564-34326735,34326995-34327089,34327246-34327455
Length = 494
Score = 32.3 bits (70), Expect = 2.4
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 1065 DLPSMEKSQKAQLRYNQSLEDRKADKNSKADVTQSLIGRTYGISSRKNSESETTYRAFGE 1124
D + EK + + YN + K + RTYG SS +++ E + FG+
Sbjct: 336 DPNAQEKFLRIKHAYNTLMNSESRSKYASTSSNTYYSSRTYGKSSTTSADEEEPFYGFGD 395
Query: 1125 FESDEESYDHN 1135
F D ++ N
Sbjct: 396 FLRDLQAEFQN 406
>08_02_0429 + 17049775-17049813,17049885-17050547
Length = 233
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 32 NCRAGGSPSPAIRWYKGGVLVVSDTHRSILPAGGLFFLRATHGRVHSDAGVYWCEATNSY 91
N R S IRW G + V+ HR+ G F + RV ++GV T+SY
Sbjct: 19 NQRGIDSIDEDIRWLARGPIEVAKRHRAF-NTRGYRFRSKRYDRVTQNSGVVVTAKTSSY 77
Query: 92 GTARSRNATL 101
+A N L
Sbjct: 78 TSASDTNPVL 87
>05_06_0185 -
26201013-26201429,26201537-26201695,26201774-26202601,
26203483-26203605
Length = 508
Score = 30.7 bits (66), Expect = 7.4
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 12/143 (8%)
Query: 56 THRSILPAGGLFFLRATH-GRVHSDAGVYWCEATNSYGTARSRNATLHVAVLREEFRLEP 114
+H + P GGL FLR H G VH C +NS+ TL R+
Sbjct: 177 SHCAFRPTGGLNFLRRLHLGEVHITGDELECLLSNSFAL---EQLTLKYCKELNYLRIPC 233
Query: 115 ESKQSAQGDTVVLECLPPRGSPEPNVYWKKNGQTLLFDGDSRMHLVDGGNLVIQDARQTD 174
+ +Q + + L PN+ T +DG + L DGG L ++ R +
Sbjct: 234 QLQQLKDLEVYERKALQMMEVKAPNL------STFHYDG-NLARLSDGGLLAVKKLRISS 286
Query: 175 AGRYQCIARNAAGTRESAIATLK 197
+Y + A+ S + T++
Sbjct: 287 FYQYNNV-HYASANLSSIVPTIE 308
>05_02_0066 - 6284265-6284600,6284671-6284773,6285262-6285380
Length = 185
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 32 NCRAGGSPSPAIRWYKGGVLVVSDTHRSILPAGGLFFLRATHGRVHSDAGVYWCEATNSY 91
N R S IRW G + V+ HR+ G F + RV ++GV T+SY
Sbjct: 80 NQRGIDSIDEDIRWLARGPIEVAKRHRAF-NTRGYRFRSKRYDRVTQNSGVVVTAKTSSY 138
Query: 92 GTARSRNATL 101
+A N L
Sbjct: 139 TSASDTNPVL 148
>04_03_0456 +
16096467-16096585,16096687-16096965,16097087-16097125,
16110110-16110773
Length = 366
Score = 30.7 bits (66), Expect = 7.4
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 32 NCRAGGSPSPAIRWYKGGVLVVSDTHRSILPAGGLFFLRATHGRVHSDAGVYWCEATNSY 91
N R S IRW G + V+ HR+ G F + RV ++GV T+SY
Sbjct: 152 NQRGIDSIDEDIRWLARGPIEVAKRHRAF-NTRGYRFRSKRYDRVTQNSGVVVTAKTSSY 210
Query: 92 GTARSRNATL 101
+A N L
Sbjct: 211 TSASDTNPVL 220
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 30.3 bits (65), Expect = 9.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 611 SNSLWEGTGVSNSTEYRNNILTDHIVELIEATPIDSKTIKL 651
S WEGT +N+T Y +++T + L A I K++ L
Sbjct: 248 SRGAWEGTEYNNATSYCKDLITTNTTLLDSALQILRKSVSL 288
>01_06_1539 + 38107108-38109649,38110563-38110915
Length = 964
Score = 30.3 bits (65), Expect = 9.8
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 570 THYVVKSLIP-GITYMFIVRTENSHG-LSGPSPVSDSVTVGDDSNSLWEGTGVSNSTE-Y 626
+H ++ IP G+ Y+ + + SH LSGP P + + GDD+ S +G ++ +E +
Sbjct: 532 SHNMISGEIPEGLQYLKLSYVDFSHNNLSGPVPPALLMIAGDDAFSENDGLCIAGVSEGW 591
Query: 627 RNN 629
R N
Sbjct: 592 RQN 594
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,987,410
Number of Sequences: 37544
Number of extensions: 1756045
Number of successful extensions: 3820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3815
Number of HSP's gapped (non-prelim): 13
length of query: 1207
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1117
effective length of database: 11,414,388
effective search space: 12749871396
effective search space used: 12749871396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)
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