GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000888-TA|BGIBMGA000888-PA|IPR003599|Immunoglobulin
subtype, IPR003598|Immunoglobulin subtype 2, IPR003961|Fibronectin,
type III, IPR013098|Immunoglobulin I-set, IPR013151|Immunoglobulin,
IPR007110|Immunoglobulin-like, IPR008957|Fibronectin, type III-like
fold
         (1207 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25480.1 68416.m03167 rhodanese-like domain-containing protei...    34   0.67 
At5g53800.1 68418.m06685 expressed protein                             31   3.5  
At2g01110.1 68415.m00019 thylakoid membrane formation protein / ...    31   3.5  
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    31   3.5  
At3g61970.1 68416.m06960 DNA-binding protein, putative similar t...    31   6.2  
At4g38650.1 68417.m05471 glycosyl hydrolase family 10 protein si...    30   8.2  
At3g26140.1 68416.m03261 glycosyl hydrolase family 5 protein / c...    30   8.2  
At3g16230.1 68416.m02048 expressed protein similar to ASC-1 comp...    30   8.2  
At2g44830.1 68415.m05582 protein kinase, putative similar to pro...    30   8.2  

>At3g25480.1 68416.m03167 rhodanese-like domain-containing protein
           contains Rhodanese-like domain PF:00581
          Length = 264

 Score = 33.9 bits (74), Expect = 0.67
 Identities = 20/102 (19%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 833 SVGLDLLSRYPMNGEVSIVAGDFVMETWF----YFLIGAIVLFKIIVIAGIIYVRKYNIF 888
           S   D +S  P +G++ + +    ++ +F    +F+ G    + ++  A + Y+RKY   
Sbjct: 62  SESFDSISSDPSSGKIDLESILVTIDNFFNKYPFFVAGCTFTYLVVYPAVMFYLRKYKPI 121

Query: 889 AKKSALPNIYDSNGTSLVTQMNIKAAVSLSHPLTSCYNKNTV 930
           +  +A   + + + + L+   ++K    L+ P      K++V
Sbjct: 122 SAMNAFRKLKNESDSQLLDIRDVKTLALLASPNLKFLGKSSV 163


>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 1066 LPSMEKSQKAQLRYNQSLEDRKADKNSKADVTQSLIGRTYGISSRKN-SESETTYRAFGE 1124
            L S  +S+K + R  +S +DR   K+ +         R Y  SS  + SESE+ Y    E
Sbjct: 66   LESGSESEKEERR--RSRKDRGKRKSDRKSSRSRRRRRDYSSSSSDSESESESEYSDSEE 123

Query: 1125 FESDEESYDHNGGYDELQAMQSQRQRPQHQYE---RPNFDNDGTR 1166
             ES++E         E +  + +R+R + + +   R   D DG +
Sbjct: 124  SESEDERRRRKRKRKEREEEEKERKRRRREKDKKKRNKSDKDGDK 168


>At2g01110.1 68415.m00019 thylakoid membrane formation protein /
           cpTatC (APG2) identical to thylakoid membrane formation
           protein (cpTatC) GI:15004994 from [Arabidopsis
           thaliana]; contains Pfam profile PF00902:  MttB family;
           identical to cDNA apg2 for cpTatC GI:15004993
          Length = 340

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 846 GEVSIVAGDFVMETWFYFLIGAIVLFKII 874
           G+V +V+GD ++  W Y ++GA+V   ++
Sbjct: 280 GQVGVVSGDQMLSIWRYVVVGAVVAAAVV 308


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
           SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
           gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 291 DPPSINLSPNSVNVESGNVARFTCTATGRPEPTMFWSVE 329
           DPPS  L PNS+ V      + T T+T  P P   + +E
Sbjct: 407 DPPSDILPPNSLPVRGAVDTKLTITSTDLPSPVQTFELE 445


>At3g61970.1 68416.m06960 DNA-binding protein, putative similar to
           DNA-binding proteins from [Arabidopsis thaliana] RAV1
           GI:3868857 and RAV2 GI:3868859, AP2 domain containing
           protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 299

 Score = 30.7 bits (66), Expect = 6.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 219 VTFQCRVGGDPLPDVLWRRSAGGGNMPLGRVKVLDDGSLRLDNVILADE 267
           V  +C  GG  +       S+ GG++P GRV ++  GSL    ++ +D+
Sbjct: 220 VDMECGGGGGSVNSTEEESSSSGGSIPRGRVSMVGAGSLLQLRLVSSDD 268


>At4g38650.1 68417.m05471 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 562

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 459 KSDSGTYTCVAS--SRHGKYVW-SGALLVDSPINPNIHFFRAAD 499
           ++D+ T  CV S  ++HG + +  G  L+DSP   +I FF  ++
Sbjct: 113 RADNATLNCVGSVTAKHGCWSFLKGGFLLDSPCKQSILFFETSE 156


>At3g26140.1 68416.m03261 glycosyl hydrolase family 5 protein /
           cellulase family protein contains Pfam profile: PF00150
           cellulase (glycosyl hydrolase family 5)
          Length = 508

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 672 DNITIEYEMKTILHSNDVSGFEITSLRKYTKYEFFLIPFYKKFEGKPSNSRVAQTLDD 729
           +N+T+    +++  ++D+SGFE    +  +  +  LI  YKK   K  N+ V   LD+
Sbjct: 75  NNVTVRQSFQSLGLNDDISGFE---TKNPSMIDLPLIEAYKKVVAKLGNNNVMVILDN 129


>At3g16230.1 68416.m02048 expressed protein similar to ASC-1 complex
           subunit P50 (GI:12061189) [Homo sapiens]
          Length = 449

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 719 SNSRVAQTLDDVPDGPPINIEMFILNTTTVHLKWSPPELQLQNGIITGYNVVVNWLDVPA 778
           ++ R+A  +D+V   P ++   F+     +H +     +  QN I+  +++  +  D  A
Sbjct: 159 ASKRIATIIDEVVRSPSLDYSHFVSLPLAIHPELVDKLVNFQNSILGIHSIASDKQDDQA 218

Query: 779 NK--SMVAINTTVHQATSLIMTNLTS--GVSY--SVQIAAETIIGLG 819
           N+  + VA++   +  T+ +   + S   VSY    +  + T++ LG
Sbjct: 219 NRATTSVAVDLKANSETNQVNVGIKSIPIVSYPPKAKSKSSTLLDLG 265


>At2g44830.1 68415.m05582 protein kinase, putative similar to
           protein kinase PVPK-1 [Phaseolus vulgaris]
           SWISS-PROT:P15792
          Length = 765

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 13/20 (65%), Positives = 17/20 (85%)

Query: 292 PPSINLSPNSVNVESGNVAR 311
           PPS N+SP+S +VES N+AR
Sbjct: 247 PPSTNVSPHSSSVESMNLAR 266


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,327,889
Number of Sequences: 28952
Number of extensions: 1390693
Number of successful extensions: 3299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3292
Number of HSP's gapped (non-prelim): 11
length of query: 1207
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1118
effective length of database: 9,493,832
effective search space: 10614104176
effective search space used: 10614104176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)