Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000887-TA|BGIBMGA000887-PA|undefined
         (102 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    28   0.25 
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    27   0.76 
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   1.3  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   2.3  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    24   4.0  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    23   7.1  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    23   7.1  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.3  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    23   9.3  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    23   9.3  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    23   9.3  

>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 28.3 bits (60), Expect = 0.25
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 13  VTQISTYLHPTLRNDFRQPEHML---SAKEMVHRELGNLLKEFSTLALLSEQPEKTTNNF 69
           V    +Y  P L ++ ++ + ++   SA EM  RE+  L +E + L  L     ++ N F
Sbjct: 194 VVWAKSYFFPQLFSNDQESDGIIDNVSANEMERREIAELARETTELNELRSSIGQSDNGF 253

Query: 70  KKPGILDFLHS--RKRDIPNA 88
           +K     F     R R++P+A
Sbjct: 254 EKIFTKMFTKDIVRLREVPDA 274


>SPAC11D3.03c |||meiotic chromosome segregation
          protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 0.76
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 49 LKEFSTLALLSEQPEKTTNNFKKP 72
          + E S LA  S++PEKT  N  KP
Sbjct: 1  MTEISELASSSQKPEKTKYNLPKP 24


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 7   AYEMRTVTQISTYLHPTLRNDFRQPEHMLSAKEMVHRELGNLLKEFSTLALLSEQPEKTT 66
           AY    V+   TY      +    P  +LS K +      + +  +S+   L+ Q  KT+
Sbjct: 772 AYLRSHVSLFETYNDDEATSLRPSPIRLLSQKSLASVSSVSSISTYSSSIELTPQITKTS 831

Query: 67  NNFKKP---GILDFLHSRKRDIPNA 88
            N +KP   G ++  HS +  +P A
Sbjct: 832 LNREKPALHGSINLKHSTRPVVPIA 856


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 45  LGNLLKEFSTL-ALLSEQPEKTTNNFKKPGILDFLHSRKRDIPN 87
           L N +  FS+   L+S    K+  N K   +LDFL    R   N
Sbjct: 290 LSNFVNSFSSFFELISHFLIKSAQNLKGDSLLDFLFDYARSCQN 333


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 27  DFRQPEHMLSAKEMVHRELGNLLKEFSTL 55
           DF  PE    + +M   +L NL+KE + +
Sbjct: 184 DFYLPERFKGSPDMQSTDLDNLMKEMNQI 212


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 47  NLLKEFSTLALLSEQPEKTTNNFKKPGILDFLHSRKRDI 85
           N L+++S + ++ E  E++ N     G+L  + SR+RDI
Sbjct: 601 NNLEKYSVI-IMDEAHERSLNTDILMGLLKKVLSRRRDI 638


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 285

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 30 QPEHMLSAK-EMVHRELGNLLKEFST-LALLSEQ 61
          + EH  S    +V+R+LGNLL+++   +A L  Q
Sbjct: 3  EEEHNKSVHWSIVYRQLGNLLEQYEVEIARLKSQ 36


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 345

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 39 EMVHRELGNLLKEFSTLALLSEQPEKTTNNFK 70
          E VH  + N  +E STL  ++   EK T++ +
Sbjct: 14 EQVHDNIENRKEEVSTLQDMANDLEKLTDHIE 45


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 56  ALLSEQPEKTTNNFKKPGILDFL 78
           ALL+   +K  NN KKP  L+FL
Sbjct: 142 ALLNSIIDKMNNNIKKPN-LEFL 163


>SPBC25B2.07c |mug164||microtubule-associated
          protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 34 MLSAKEMVHRELGNLLKEFSTLALLSEQPEKTTNNFKKPGILD 76
          ML   E +  +  N+LKE  + ++ ++      +N  +  ++D
Sbjct: 1  MLQRLEQLQMQTSNILKELHSTSIFTDSTTSQLHNGGENSVMD 43


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 51  EFSTLALLSEQPEKTTNNFKKPGILDFLHS 80
           ++  LAL+SE+      +F K  +LD  HS
Sbjct: 333 DYQYLALVSERGTLKLFDFVKEHVLDVFHS 362


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,187
Number of Sequences: 5004
Number of extensions: 17604
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 11
length of query: 102
length of database: 2,362,478
effective HSP length: 63
effective length of query: 39
effective length of database: 2,047,226
effective search space: 79841814
effective search space used: 79841814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)