GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000887-TA|BGIBMGA000887-PA|undefined
         (102 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   1.5  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    20   4.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   5.9  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 65  TTNNFKKPGILDFLHSRKRDIPN 87
           T  N KK   LD  H+R  +IPN
Sbjct: 291 TFRNTKKLQWLDTSHNRISEIPN 313



 Score = 21.4 bits (43), Expect = 1.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 58  LSEQPEKTTNNFKKPGILDFLHSRKRDIPN 87
           +SE P           I+DF H+R R +P+
Sbjct: 308 ISEIPNDLFRFLGNLRIVDFSHNRLRSLPD 337


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 5   LLAYEMRTVTQISTYLHPTLRNDFRQPEHMLSAKE 39
           L  + + T T I T L   +  DF +  H+LS  E
Sbjct: 175 LAKFMIFTSTCIYTNLLRIIEADFSKLNHLLSGTE 209


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 52  FSTLALLSEQPEKTTNNFKKPGI 74
           F  LAL+ E+ E  T   ++PG+
Sbjct: 86  FPLLALIFEKCELATCTPREPGV 108


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,155
Number of Sequences: 317
Number of extensions: 876
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 102
length of database: 114,650
effective HSP length: 48
effective length of query: 54
effective length of database: 99,434
effective search space:  5369436
effective search space used:  5369436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)