Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000887-TA|BGIBMGA000887-PA|undefined
(102 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0203 + 26717246-26717354,26718797-26719575 28 1.2
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 27 3.6
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 26 4.7
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 26 4.7
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267... 26 6.2
09_02_0102 - 4295329-4295366,4295622-4295702,4295946-4296252,429... 26 6.2
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 26 6.2
07_01_0928 + 7795586-7795615,7795716-7795873,7796151-7796212,779... 25 8.3
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858... 25 8.3
>02_05_0203 + 26717246-26717354,26718797-26719575
Length = 295
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 18 TYLHPTLRNDFRQPEHMLSAKEMVHRELGNLLKEFSTLALLSE-QPEKTT 66
T LH + +D PE LSAK G+LL+EF T + + E QP T
Sbjct: 69 TRLHKSQPSDV-VPESQLSAKARQEIHDGDLLREFKTSSTVPEIQPVNET 117
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 1 MVGRLLAYEMRTVTQISTYLHPTLRNDFRQPEHMLSAKEMVHRELGNLLKE 51
M+G+L R++T+IS + TL ND + K V R LG L K+
Sbjct: 444 MMGQLEISSARSITEISESMEDTLLND-----DNFTRKVNVIRSLGELTKD 489
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 29 RQPEHMLSAKEMVHRELGNLLKEFSTLALLSEQPEKTTNNFKKPGILDFLHSRKRDI 85
R P ++ K + LG++ S +A+ SE+P++ G+ SR D+
Sbjct: 697 RGPPQQINTKPPIVNTLGSVSNVSSPMAVNSERPDRALPTVSMSGLAPMDVSRTPDV 753
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 42 HRELGNLLKEFSTLALLSEQ-PEKTTNNFKKPGILDFLHSRKRDIPNATRHGGHSEYS-- 98
H NLL+ F L+++ PE++ K+P ++ R++ + +EY+
Sbjct: 108 HHVYKNLLRIFIVQDKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADK 167
Query: 99 ANVY 102
AN+Y
Sbjct: 168 ANIY 171
>11_06_0023 -
19325966-19326046,19326132-19326248,19326635-19326703,
19326922-19327119,19327388-19327591,19327688-19327828,
19328416-19328625,19329330-19329944
Length = 544
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 29 RQPEHMLSAKEMVHRELGNLLKEFSTLALLSEQPEKTTNNFKKPGILDFLHSRKRDIP 86
R ++ +S + ++H+E G + L E +KT KK G+ D+ + + D+P
Sbjct: 289 RAIDYEISRQILLHKE-GQADQIVQETRLWDESSQKTFTMRKKEGLADYRYFPEPDLP 345
>09_02_0102 -
4295329-4295366,4295622-4295702,4295946-4296252,
4296616-4296696,4296818-4296919,4297358-4297396,
4297453-4297548,4297624-4297683,4297942-4297995,
4298230-4298307,4298577-4298630,4298705-4298788,
4300457-4300485,4300666-4300720
Length = 385
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 49 LKEFSTLALLSEQPEKTT-----NNFKKPGILDFLHSRKRDIPNA 88
+K+FS L L ++P KTT + + ++ FL +R+ ++P A
Sbjct: 9 IKQFSALMELLDEPLKTTFQHVHQGYARGTLVRFLKAREWNVPKA 53
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 42 HRELGNLLKEFSTLALLSEQPEKTTNNFK 70
HR+L + KE L + +Q E+T NN K
Sbjct: 200 HRQLIDRSKELKILQVAVKQKEQTLNNLK 228
>07_01_0928 +
7795586-7795615,7795716-7795873,7796151-7796212,
7799021-7799081,7799767-7799911
Length = 151
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 61 QPEKTTNNFKKPGILDFLHSRKRDIPNATRHGGHSEYSANV 101
+P + +N P LH+ R + + H G E N+
Sbjct: 35 KPSTSDSNIINPCFFQLLHNHHRHLRHVRNHRGKEELKTNL 75
>03_06_0474 -
34184002-34184660,34184755-34184887,34185071-34185886,
34186013-34186104,34186710-34186863
Length = 617
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 20 LHPTLRNDFRQPEHMLSAKEMVHRELGNLLKEFSTLALLSEQPEKTTNNFKKPGILDFLH 79
+HP +++ R+ + ++ ++ + L L++ L L +PEK + K P + D +
Sbjct: 535 MHPWVKSA-RKMAPVWGSEGLLEKILQMLVQRREELGLSKTKPEKKALDRKWPDLSDCID 593
Query: 80 SRKRDIPN 87
RD+ N
Sbjct: 594 RVGRDVEN 601
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,766
Number of Sequences: 37544
Number of extensions: 98496
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 9
length of query: 102
length of database: 14,793,348
effective HSP length: 71
effective length of query: 31
effective length of database: 12,127,724
effective search space: 375959444
effective search space used: 375959444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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