GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000887-TA|BGIBMGA000887-PA|undefined
         (102 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93)            32   0.099
SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.40 
SB_32614| Best HMM Match : UPF0149 (HMM E-Value=6.1)                   28   1.6  
SB_30977| Best HMM Match : UPF0149 (HMM E-Value=6.1)                   28   1.6  
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)                    27   3.7  
SB_57141| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_14139| Best HMM Match : E3_binding (HMM E-Value=2.4)                27   3.7  
SB_27022| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    26   4.9  
SB_45908| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_28986| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_42536| Best HMM Match : RVT_1 (HMM E-Value=0.06)                    25   8.6  

>SB_54653| Best HMM Match : Peptidase_M24 (HMM E-Value=0.93)
          Length = 1104

 Score = 31.9 bits (69), Expect = 0.099
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query: 61   QPEKTTNNFKKPGILDFLHSRKRDIPNATRHGGHSEYSANVY 102
            Q E+    F+ PG +   H  K  IPNAT   G      NVY
Sbjct: 1045 QLEEVKTEFRGPGGVKLSHLMKGQIPNATFQAGDKAQHENVY 1086


>SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1821

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 61   QPEKTTNNFKKPGILDFLHSRKRDIPNATRHGGHSEYSANVY 102
            Q E+    F+ PG +   H  K  I NAT   G   +  NVY
Sbjct: 1036 QLEEVKTEFRGPGGVKLSHLMKGQITNATFQAGDKAHHENVY 1077


>SB_32614| Best HMM Match : UPF0149 (HMM E-Value=6.1)
          Length = 175

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 52  FSTLALLSEQPEKTTNNFKKPGI 74
           FS    L+EQP+K T   KKPG+
Sbjct: 134 FSYFPKLAEQPQKKTKKPKKPGL 156


>SB_30977| Best HMM Match : UPF0149 (HMM E-Value=6.1)
          Length = 166

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 52  FSTLALLSEQPEKTTNNFKKPGI 74
           FS    L+EQP+K T   KKPG+
Sbjct: 134 FSYFPKLAEQPQKKTKKPKKPGL 156


>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 31  PEHMLSAKEMVHRELGNLLKEFSTLALLSEQ---PEKTTNNFKK-PGILDFLHSRKRDIP 86
           P H L A  ++  ELG+L  E   +A LS+    P++T++   K   + D     +R +P
Sbjct: 122 PIHALLASYVMQAELGDLHPEEHEVAYLSDLKFFPKQTSDEVNKVSSVFDITLLLERYMP 181

Query: 87  NATRHGG 93
               +GG
Sbjct: 182 QKWIYGG 188


>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 9/62 (14%)

Query: 8   YEMRTVTQISTYLHPT-------LRNDF--RQPEHMLSAKEMVHRELGNLLKEFSTLALL 58
           Y+M T+  I+T+LH         +RN F  R P  + SA E+  R++  L++  + + ++
Sbjct: 764 YQMPTIEDIATHLHGAKFFTVLDVRNGFWHRMPFGISSAPEVFQRKIHELIEGLTGIEVV 823

Query: 59  SE 60
           ++
Sbjct: 824 AD 825


>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
          Length = 1667

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 2   VGRLLAYEMRTVTQISTYLHPTLRND-FRQPEHMLSAKEMVHRELGNLLKEFSTLALLSE 60
           VGR L   ++   +  T L  T R D F+  E +  +K      L   +K  +   L S+
Sbjct: 424 VGRNLVSRLKITFEGET-LQDTNRYDVFKTYEELYLSKVEREDRLEQGIKSENMRKLRSK 482

Query: 61  QPEKTTNNFKKPGILDFLHSRKRDIP 86
             +KTT+N K+   L+  H  K  IP
Sbjct: 483 AGDKTTSNAKE-NALNAAHGAKYTIP 507


>SB_57141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 20  LHPTLRNDFRQPEHMLSAKEMVHRELG 46
           +H TL     Q  HML+ K+M+++E G
Sbjct: 200 MHRTLNAQRGQTIHMLNLKDMINKETG 226


>SB_14139| Best HMM Match : E3_binding (HMM E-Value=2.4)
          Length = 301

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 2   VGRLLAYEMRTVTQISTYLHPTLRND-FRQPEHMLSAKEMVHRELGNLLKEFSTLALLSE 60
           VGR L   ++   +  T L  T R D F+  E +  +K      L   +K  +   L S+
Sbjct: 54  VGRNLVSRLKITFEGET-LQDTNRYDVFKTYEELYLSKVEREDRLEQGIKSENMRKLRSK 112

Query: 61  QPEKTTNNFKKPGILDFLHSRKRDIP 86
             +KTT+N K+   L+  H  K  IP
Sbjct: 113 AGDKTTSNAKE-NALNAAHGAKYTIP 137


>SB_27022| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 496

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/72 (25%), Positives = 32/72 (44%)

Query: 4   RLLAYEMRTVTQISTYLHPTLRNDFRQPEHMLSAKEMVHRELGNLLKEFSTLALLSEQPE 63
           RLL Y        +T L   LR+  +  +   SA   +HR+ G +L  +    +   +  
Sbjct: 302 RLLGYIWNGHYSFNTVLTMGLRSAAQACQRATSAVAWIHRQQGKVLFNYLDDFIGVSEAS 361

Query: 64  KTTNNFKKPGIL 75
             T++F++ G L
Sbjct: 362 SATSDFEQLGTL 373


>SB_45908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 4   RLLAYEMRTVTQISTYLHPTLRNDFRQPEHMLSAKEMVHRELGNLLKEFSTLALLSEQPE 63
           RLL Y         T L   LR+  +  +   SA   +HR+ G +L  +    +   +  
Sbjct: 482 RLLGYIWNGHYYFDTVLTMGLRSAAQACQRATSAVAWIHRQQGKVLFNYLDDFIGVSEAS 541

Query: 64  KTTNNFKKPGIL 75
             T++F++ G L
Sbjct: 542 SATSDFEQLGTL 553


>SB_28986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 30  QPEHMLSAKEMVHRELGNLLKEFS-TLALLSEQPE--KTTNNFKKPGILDFLHSRKRDIP 86
           QP++ +  ++ V  E G L++E S       E+ +   T  N K PGI +      +  P
Sbjct: 114 QPDNPIEPEDEVEFEFGELIEEISVNEPFFGEEKDTITTPKNGKSPGIDNITAELLKADP 173

Query: 87  NATRHGGH 94
             +  G H
Sbjct: 174 EFSAKGVH 181


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 4    RLLAYEMRTVTQISTYLHPTLRNDFRQPEHMLSAKEMVHRELGNLLKEFSTLALLSEQPE 63
            RLL Y         T L   LR+  +  +   SA   +HR+ G +L  +    +   +  
Sbjct: 1942 RLLGYIWNGHYYFDTVLTMGLRSAAQAGQRATSAIAWIHRQQGKVLFNYLDDFIGVSEAS 2001

Query: 64   KTTNNFKKPGIL 75
              T++F++ G L
Sbjct: 2002 SATSDFEQLGTL 2013


>SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 2   VGRLLAYEMRTVTQISTYLHPTLRNDFRQPEHMLSAKEMVHRE 44
           VG+ L    RT+T ++  L   L +   + EH L     VH E
Sbjct: 162 VGQSLTSGQRTLTSLTVTLSVVLGSTATREEHSLQFHRAVHPE 204


>SB_42536| Best HMM Match : RVT_1 (HMM E-Value=0.06)
          Length = 353

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 4   RLLAYEMRTVTQISTYLHPTLRNDFRQPEHMLSAKEMVHRELGNLLKEFSTLALLSEQPE 63
           RLL Y         T L   LR+  +  +   SA   +HR+ G +L  +    +   +  
Sbjct: 218 RLLGYIWNGHYYFDTVLTMGLRSAAQACQRATSAVAWIHRQQGKVLFNYLDDFIGVSEAS 277

Query: 64  KTTNNFKKPGIL 75
             T++F++ G L
Sbjct: 278 SATSDFEQLGTL 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,350
Number of Sequences: 59808
Number of extensions: 117261
Number of successful extensions: 296
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 15
length of query: 102
length of database: 16,821,457
effective HSP length: 71
effective length of query: 31
effective length of database: 12,575,089
effective search space: 389827759
effective search space used: 389827759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)