GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000887-TA|BGIBMGA000887-PA|undefined
         (102 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   3.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   9.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   9.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   9.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 29  RQPEHMLSAKEMVHREL 45
           RQPE  +S   M H EL
Sbjct: 375 RQPEDTMSVDRMQHCEL 391


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 29  RQPEHMLSAKEMVHREL 45
           RQPE  +S   M H EL
Sbjct: 375 RQPEDTMSVDRMQHCEL 391


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 16  ISTYLHPTLRNDFRQP 31
           ++  ++ TL  DFR+P
Sbjct: 422 LNPIIYATLNRDFRKP 437


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 5/17 (29%), Positives = 12/17 (70%)

Query: 28   FRQPEHMLSAKEMVHRE 44
            FR+PEH +++  ++  +
Sbjct: 1617 FRKPEHFVASYALISNQ 1633


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
          protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 9.1
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 49 LKEFSTLALLSEQPEKTTNNFKKPGILDFLHS 80
          +KE        ++P K  N   K    D LH+
Sbjct: 1  MKEHEATGTCQKKPTKLRNLIYKTEAFDSLHA 32


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,661
Number of Sequences: 429
Number of extensions: 1017
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 102
length of database: 140,377
effective HSP length: 49
effective length of query: 53
effective length of database: 119,356
effective search space:  6325868
effective search space used:  6325868
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)