Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000887-TA|BGIBMGA000887-PA|undefined
(102 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta... 28 1.3
At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domai... 27 2.3
At4g26900.1 68417.m03870 imidazole glycerol phosphate synthase h... 27 3.1
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 26 4.0
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa... 26 4.0
At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue... 26 4.0
At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue... 26 4.0
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 26 5.3
At4g35450.4 68417.m05039 ankyrin repeat family protein / AFT pro... 26 5.3
At4g35450.3 68417.m05038 ankyrin repeat family protein / AFT pro... 26 5.3
At4g35450.2 68417.m05037 ankyrin repeat family protein / AFT pro... 26 5.3
At4g35450.1 68417.m05036 ankyrin repeat family protein / AFT pro... 26 5.3
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 25 7.1
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 25 7.1
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ... 25 9.3
>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226:
DnaJ domain
Length = 2554
Score = 27.9 bits (59), Expect = 1.3
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 2 VGRLLAYEMRTVTQISTYLHPTLRN----DFRQPEHMLSAKEMVHRELGNLLKEFSTLAL 57
V +A MRT+ + ++R+ D H+L+A + E + ++ L
Sbjct: 659 VRETIAVIMRTIAEEDAIAAESMRDAALRDGALLRHLLNAFSLPASERREVSRQLVALWA 718
Query: 58 LSEQPE-KTTNNFKKPGILDFLHSRKRDIPNATRHGGHS 95
S QP + PG++ +LH+R D+ + T G S
Sbjct: 719 DSYQPALDLLSRVLPPGLVAYLHTRPDDVVDDTDQEGSS 757
>At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 692
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 10 MRTVTQISTYLHPTLRNDFRQPE----HMLSAKEMVHRELGNLLKEFSTLALLSEQPEKT 65
+RT YL + DFR PE M + +V+R+ L K+F TL LL EK+
Sbjct: 350 LRTYDGQLAYLDFGMMGDFR-PELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKS 408
>At4g26900.1 68417.m03870 imidazole glycerol phosphate synthase
hisHF, chloroplast / IGP synthase / ImGPP synthase /
IGPS identical to SP|Q9SZ30 Imidazole glycerol
phosphate synthase hisHF, chloroplast precursor (IGP
synthase) {Arabidopsis thaliana}
Length = 592
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 43 RELGNLLKEFSTLALLSEQPEKTTNNFKKPGILDFLHSRKRDIPNATRHGGHS 95
+ +GN+ ++F + LS + T+++ +LD+ R I NA RH G S
Sbjct: 37 KSIGNVNRKFKSPRSLSVRASSTSDSVVT--LLDYGAGNVRSIRNALRHLGFS 87
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 26 NDFRQPEHMLSAKEMVHRELGNLLKEFSTLALLSEQPEKTTNNFKKPGILDFL 78
+D RQ H+L+ K ++H +L L++ LA L + + + +PG FL
Sbjct: 512 SDLRQGLHVLAEKSLIHMDL-RLIRMHVLLAQLGREIVR-KQSIHEPGQRQFL 562
>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 508
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 69 FKKPGILDFLHSRKRDIPNATRHGGHSEYSANV 101
FKK +LDFL + ++ A + +S ++
Sbjct: 330 FKKSSVLDFLEKLRDELKEANKKNSRGSFSGSI 362
>At1g04400.2 68414.m00431 cryptochrome 2 apoprotein (CRY2) / blue
light photoreceptor (PHH1) 97% identical to photolysase
(PHH1) (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
(SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
gene; contains Pfam profiles PF03441: FAD binding domain
of DNA photolyase and PF00875: deoxyribodipyrimidine
photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
GI:18026275
Length = 612
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 67 NNFKKPGILDFLHSRKRDIPNATRHGG 93
N K+PG+ + S + +P+A R+ G
Sbjct: 513 NTIKEPGLCPSVSSNDQQVPSAVRYNG 539
>At1g04400.1 68414.m00430 cryptochrome 2 apoprotein (CRY2) / blue
light photoreceptor (PHH1) 97% identical to photolysase
(PHH1) (SP:Q96524) and cryptochrome 2 apoprotein (CRY2)
(SP:U43397). ESTs gb|W43661 and gb|Z25638 come from this
gene; contains Pfam profiles PF03441: FAD binding domain
of DNA photolyase and PF00875: deoxyribodipyrimidine
photolyase; identical to cDNA Cvi cryptochrome 2 (CRY2)
GI:18026275
Length = 612
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 67 NNFKKPGILDFLHSRKRDIPNATRHGG 93
N K+PG+ + S + +P+A R+ G
Sbjct: 513 NTIKEPGLCPSVSSNDQQVPSAVRYNG 539
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 34 MLSAKEMVHRELGNLLKEFSTLALLSEQPEKTTNNFKKPGILDFLHSRKRDI 85
M KE+ LG + + L LLS Q + TT+ +L+ + + RD+
Sbjct: 488 MTGPKELTEESLGVNYRALADLFLLSNQRKDTTSYEISVQMLEIYNEQVRDL 539
>At4g35450.4 68417.m05039 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 304
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 51 EFSTLALLSEQP---EKTTNNFKKPGILDFLHSRKRDIPNATRHGGHSEYSANVY 102
+FS +A + P E K P +R IPNA + GG + Y
Sbjct: 10 DFSNMASILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQY 64
>At4g35450.3 68417.m05038 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 342
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 51 EFSTLALLSEQP---EKTTNNFKKPGILDFLHSRKRDIPNATRHGGHSEYSANVY 102
+FS +A + P E K P +R IPNA + GG + Y
Sbjct: 48 DFSNMASILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQY 102
>At4g35450.2 68417.m05037 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 342
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 51 EFSTLALLSEQP---EKTTNNFKKPGILDFLHSRKRDIPNATRHGGHSEYSANVY 102
+FS +A + P E K P +R IPNA + GG + Y
Sbjct: 48 DFSNMASILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQY 102
>At4g35450.1 68417.m05036 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 342
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 51 EFSTLALLSEQP---EKTTNNFKKPGILDFLHSRKRDIPNATRHGGHSEYSANVY 102
+FS +A + P E K P +R IPNA + GG + Y
Sbjct: 48 DFSNMASILNDPSIREMAEQIAKDPAFNQLAEQLQRSIPNAGQEGGFPNFDPQQY 102
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 66 TNNFKKPGILDFLHSRK 82
++N G+LDFLHS+K
Sbjct: 622 SHNLSLDGVLDFLHSKK 638
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 66 TNNFKKPGILDFLHSRK 82
++N G+LDFLHS+K
Sbjct: 662 SHNLSLDGVLDFLHSKK 678
>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
Pfam profilePF03107: DC1 domain
Length = 569
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 77 FLHSRKRDIPNATRHGGHSEY 97
FLH R D+P RH H E+
Sbjct: 165 FLHERCLDLPTEIRHPVHLEH 185
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,224
Number of Sequences: 28952
Number of extensions: 84079
Number of successful extensions: 210
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 15
length of query: 102
length of database: 12,070,560
effective HSP length: 70
effective length of query: 32
effective length of database: 10,043,920
effective search space: 321405440
effective search space used: 321405440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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