GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000886-TA|BGIBMGA000886-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
         (129 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.7  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    20   8.5  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    20   8.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 38   PSVTPAPPQQFVTVVPAQQMGPEPTN 63
            PS TP  P + VT   ++ +G + ++
Sbjct: 2294 PSTTPMVPDKPVTTTTSRPIGTDTSD 2319



 Score = 19.8 bits (39), Expect = 8.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 40   VTPAPPQ 46
            VTPAPPQ
Sbjct: 1010 VTPAPPQ 1016


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 35  PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTS 65
           P  P  TP P     T     Q   +PT +S
Sbjct: 392 PPEPVPTPEPQPTQTTESEPTQASEQPTESS 422


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative
          cytochrome P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 33 LYPAVPSVTPAPPQQFVT 50
          L+P+VP ++    + FVT
Sbjct: 57 LFPSVPFISRYASEDFVT 74


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.135    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,937
Number of Sequences: 317
Number of extensions: 1280
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 129
length of database: 114,650
effective HSP length: 50
effective length of query: 79
effective length of database: 98,800
effective search space:  7805200
effective search space used:  7805200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)