Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000886-TA|BGIBMGA000886-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
(129 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 29 0.23
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.30
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 1.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 1.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 3.7
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 25 4.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 4.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 4.9
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 4.9
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 24 6.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 6.5
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 24 6.5
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 24 8.6
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 24 8.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 24 8.6
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 29.1 bits (62), Expect = 0.23
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGP 59
P P P Q+VT++PA+++GP
Sbjct: 280 PDHIPGPDAQWVTILPARKLGP 301
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.7 bits (61), Expect = 0.30
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 33 LYPAVPSVTPAPPQQFVTVVPAQQMGPE------PTNTSCPSCSAAIVTR-------VDH 79
LYP V TP P ++ V+P P+ PT+ CP C + R +++
Sbjct: 629 LYPPVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPCPYFVKKRCLCGKHILEN 688
Query: 80 VPVTKTHLFALLLC--LIGC----CPCACIP--YCTDSCK 111
P + ++ LC L+ C C C P C SCK
Sbjct: 689 QPCYRENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCK 728
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 1.2
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 35 PAV-PSVTPAPPQQFVTVVPAQQMGPEPTNTS-CPSCSAAIVTRVD 78
PA+ P VTPAPP T P P +S PS A +T +
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHAN 766
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 36 AVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSC 69
A PSV+P P QQ + PTN + SC
Sbjct: 533 AKPSVSPMPLQQSTGKTEVAKRAQFPTNVNYSSC 566
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 36 AVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
A P++ AP Q+ +V PA M TNT+ S
Sbjct: 134 ASPNIMNAPLQRDTSVPPAPSMVHPHTNTNANS 166
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 3.7
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 61 PTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPNC 120
PT++S P + T VP T T + + L C +PY + NC
Sbjct: 415 PTSSSTPLTTTNCTTSTS-VPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNC 473
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEP-TNTSCPS 68
P++T P VT PA +GP P S PS
Sbjct: 561 PNITSPSPSISVTQRPAVNVGPPPYVRPSAPS 592
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 24.6 bits (51), Expect = 4.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVP 81
P +PS APP PAQ P + S PS +A+ VP
Sbjct: 158 PPIPS--KAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEP 61
P VP V P + V VVP P+P
Sbjct: 641 PVVPEVPSVPQRPAVPVVPEAPSVPQP 667
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 4.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 117 CPNCNAYIGSY 127
CP CN+ IGSY
Sbjct: 289 CPKCNSKIGSY 299
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 24.2 bits (50), Expect = 6.5
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 96 GCCPCACIPYCTDSCKDANHYC 117
GCCP PY ++YC
Sbjct: 1235 GCCPVCFCPYEKSKQSTEDYYC 1256
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 32 GLYPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAI 73
GL +P ++P PPQ T P+ Q G + T+ + +I
Sbjct: 968 GLNNRLP-ISPLPPQLHKTGTPSHQHGFDTAETTAKQYAPSI 1008
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 24.2 bits (50), Expect = 6.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 92 LCLIGCCPCACIPYC---TDSCKDANH-YCPNCNAYIGS 126
LC+ C C+ P C S ANH C NC A+I S
Sbjct: 77 LCVDICNGCST-PICEFNAVSNSQANHPCCSNCRAFINS 114
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 34 YPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
Y + S P P V+ P P+N SCPS ++
Sbjct: 287 YTTLVSQLPPSPCLTVSSGPLSTASSIPSNCSCPSVKSS 325
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 54 AQQMGPEPTNTSCPSCSAAIVTR 76
AQ+ P+P N S P VTR
Sbjct: 602 AQENSPQPVNGSSPPYELVFVTR 624
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 38 PSVTPAP-PQQFVTVVPAQQMGPEPTNTSCPSCSAAIVT 75
P+ +P+ P + T VP + + P+PT P S+ V+
Sbjct: 581 PNASPSVIPPRVPTPVPGRTLSPKPTRIPTPIPSSLNVS 619
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.135 0.461
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,545
Number of Sequences: 5004
Number of extensions: 19283
Number of successful extensions: 66
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 21
length of query: 129
length of database: 2,362,478
effective HSP length: 66
effective length of query: 63
effective length of database: 2,032,214
effective search space: 128029482
effective search space used: 128029482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 49 (23.8 bits)
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