Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000886-TA|BGIBMGA000886-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
(129 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0313 + 2216498-2216953 32 0.17
02_03_0221 - 16554910-16555560 29 0.89
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 29 1.2
07_03_0600 + 19866757-19867218,19867920-19868429 29 1.2
04_04_0138 + 23067885-23068245,23068393-23068634 29 1.2
07_01_0310 + 2209084-2209554 29 1.6
03_05_0864 - 28362146-28362500,28362585-28362629,28362727-28363085 29 1.6
12_02_0233 - 16023062-16023253,16023528-16023609,16023699-160238... 28 2.1
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 28 2.1
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 2.7
07_01_0312 + 2214050-2214556 28 2.7
06_03_0854 + 25400855-25403741,25406174-25407708 28 2.7
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 28 2.7
10_06_0036 - 9914606-9915561,9916287-9916368 27 3.6
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 3.6
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 27 4.8
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 27 4.8
02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928... 27 4.8
01_05_0534 + 22999876-23000333,23000835-23000949 27 4.8
12_02_0090 + 13493311-13494180 27 6.3
09_01_0180 + 2632507-2634870 27 6.3
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 27 6.3
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 27 6.3
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 6.3
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871... 27 6.3
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 26 8.3
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 26 8.3
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 26 8.3
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 26 8.3
03_06_0189 + 32214702-32215154 26 8.3
03_01_0578 + 4270835-4271482,4271763-4272140,4272353-4272444,427... 26 8.3
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049... 26 8.3
>07_01_0313 + 2216498-2216953
Length = 151
Score = 31.9 bits (69), Expect = 0.17
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVP 81
PAVP VT PP + VPA M P P + P+ + + V VP
Sbjct: 67 PAVPKVT-LPPMPAIPTVPAVTMPPMPAVPAVPAVTLPPMPAVPTVP 112
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRV 77
P VP+VT PP V VPA + P P + P + + V
Sbjct: 81 PTVPAVT-MPPMPAVPAVPAVTLPPMPAVPTVPPNTVVVPAAV 122
>02_03_0221 - 16554910-16555560
Length = 216
Score = 29.5 bits (63), Expect = 0.89
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 89 ALLLCLIGCCPCACIPYC-TDSCKDA 113
AL CL+G C C C TDS +DA
Sbjct: 78 ALTACLVGACALCCFLLCFTDSYRDA 103
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 35 PAVP-SVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFA 89
PA P S P P T VP P PT T+ P+ + A+ + D+ ++L A
Sbjct: 102 PAAPASQAPVAP---ATTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVA 154
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCP 67
P P P PPQQF +P QQ P P + + P
Sbjct: 76 PPPPQYAPPPPQQF--QLPHQQYAPPPQHYAPP 106
>04_04_0138 + 23067885-23068245,23068393-23068634
Length = 200
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 39 SVTPAPPQQF-VTVVPAQQMGPEP-TNTSCPSCSAAIVTRVDHVPV 82
S P+ P VT P QQM P P T++ P S+ + D VPV
Sbjct: 142 STAPSTPTPVTVTRAPPQQMTPSPKTSSQTPEYSSGLKLIADCVPV 187
>07_01_0310 + 2209084-2209554
Length = 156
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCS 70
PAVP+VT PP + +PA + P P + P+ +
Sbjct: 23 PAVPAVT-LPPMPAIPAIPAATLPPIPAVPTVPNAA 57
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 35 PAVPSVT--PAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVP 81
PAVP V P P V VPA + P P + P+ + + V VP
Sbjct: 62 PAVPKVALPPMPAVPAVPTVPAVALPPMPAVPAVPTATLPPMPAVPAVP 110
>03_05_0864 -
28362146-28362500,28362585-28362629,28362727-28363085
Length = 252
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMG----PEPTNTSCPSCSAAIVTRVDHVPVTKTHLFAL 90
P PS P P QQ T P QQ P+ P+ +A+ D V + T F +
Sbjct: 28 PRPPSAQPPPEQQPPTPTPTQQQSMQAQPQARPRRAPAAAASGADSTDWVATSLTRRFGI 87
>12_02_0233 -
16023062-16023253,16023528-16023609,16023699-16023809,
16023890-16024141,16024227-16024580,16024893-16025548,
16025554-16026459,16026550-16026747
Length = 916
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
PA S TP+ Q PA + PEP + PS
Sbjct: 548 PAAGSSTPSSSQAMTAAAPAPPLPPEPPSPRHPS 581
>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 37 VPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
VP P PPQ F+ VV + +G + T P C ++ + P T+
Sbjct: 1291 VPIYEPLPPQYFIRVVSDKWLG---SQTILPVCFRHLILPEKYAPPTE 1335
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 LYPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
+YP+ P VTP+PP+ P + + P T PS
Sbjct: 432 VYPSPPEVTPSPPEIAPYPSPPEIVPSPPEITPYPS 467
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 33 LYPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
+YP+ P VTP+PP+ P + P T PS
Sbjct: 556 IYPSPPEVTPSPPEITPYPSPPEVTPGPPEITPYPS 591
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 34 YPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
YP+ P +TP+PP+ P + + P T PS
Sbjct: 589 YPSPPEITPSPPEITPYPSPPEVVPSPPKITPYPS 623
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 34 YPAVPSVTPAPPQQFVTVVPA-QQMGPEPTN-TSCPS 68
YP+ P VTP PP+ +T P+ ++ P P T PS
Sbjct: 573 YPSPPEVTPGPPE--ITPYPSPPEITPSPPEITPYPS 607
>07_01_0312 + 2214050-2214556
Length = 168
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCS 70
P VP+VT PP + VPA + P P + P+ +
Sbjct: 43 PTVPAVT-LPPMPAIPAVPAATLPPMPAVPTVPNAA 77
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 37 VPSVTPAPPQQFVTVVPAQQMGPEPTNT 64
VP PAPP V +VP P PT++
Sbjct: 299 VPVQVPAPPSSDVALVPVPVQVPAPTSS 326
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGP 59
PA P+ +P PP V PAQQ P
Sbjct: 93 PAAPASSPHPPPPSAPVAPAQQGEP 117
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 37 VPSVTPA--PPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
VPSV PA PP V VVPA P + + P +AA
Sbjct: 190 VPSVPPAAAPPSTPVVVVPAPATSPPMSMPATPPEAAA 227
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSA 71
P P++ PP Q+ +P Q+ P P + PS A
Sbjct: 281 PPPPTLQSQPPSQYPGHLPHSQVPPVPPSAPVPSVPA 317
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
PA S TP+ Q PA PEP + PS
Sbjct: 393 PAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPS 426
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTN 63
PA P P PPQ P QQ P P +
Sbjct: 66 PASPPPAPTPPQTRPPSPPPQQQQPRPVS 94
>02_03_0408 -
18692176-18692278,18692590-18692669,18692764-18692890,
18694016-18694051,18695832-18696085
Length = 199
Score = 27.1 bits (57), Expect = 4.8
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 52 VPAQQ--MGPEPTNTSCPSCSAAIVTRV---DHV--PV---TKTHLFALLLCLIGCCPCA 101
VP QQ P C +C AA V+ + D + PV +K L +++ C++
Sbjct: 57 VPLQQTMFRDTPAPFHCQACGAAAVSSLRSEDTIFFPVHGRSKPSLASVVACMMPFMMGV 116
Query: 102 CIPYCTDSCK-DANHYCPNCNAYIGSYNR 129
C + C HYCP+C + + +
Sbjct: 117 CFLCPSMDCLWHKYHYCPSCGEKVAEFKK 145
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCS 70
PA P ++P P ++ P P P + PS S
Sbjct: 49 PAAPPLSPPPKTPTLSTPPTLSQPPTPVKPAAPSSS 84
>12_02_0090 + 13493311-13494180
Length = 289
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
P PS T AP + +VPA P+P S P+
Sbjct: 88 PTAPSQTTAPSLATI-LVPATTSAPKPATASSPT 120
>09_01_0180 + 2632507-2634870
Length = 787
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 34 YPAVPSVTPAPPQQFVTVVPAQQMGPEP 61
+P PS P P QQ +V P + P P
Sbjct: 224 FPKKPSPPPPPAQQQQSVPPMSKFNPSP 251
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 32 GLYPAVPSVTPAPPQQFVTVVPAQQMGPEPT 62
GL P V P P Q V P Q GPE T
Sbjct: 958 GLRPLTTGVGPLPACQTVLGAPDPQEGPEAT 988
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 32 GLYPAVPSVTPAPPQQFVTVVPAQQMGPEPT 62
GL P V P P Q V P Q GPE T
Sbjct: 806 GLRPLTTGVGPLPACQTVLGAPDPQEGPEAT 836
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 26.6 bits (56), Expect = 6.3
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 62 TNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPN-C 120
T T +C+ +V D V KT L C I C P C AN C N C
Sbjct: 94 TMTGLVACAVLVVPSADAVDALKTCTCLLKECRIELAKCIANPSCA-----ANVACLNTC 148
Query: 121 N 121
N
Sbjct: 149 N 149
>04_02_0026 +
8708765-8710935,8711021-8711272,8711353-8711463,
8711553-8711634,8711909-8712100
Length = 935
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEP 61
PA S TP+ Q T PA PEP
Sbjct: 463 PAAGSSTPSSSQAMTTAAPAPPSPPEP 489
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 35 PAVPSVTPAPPQQFVTVVP--AQQMGPEPTNTSCPSCSA 71
PA+P P PP F +P A P P T P+ A
Sbjct: 52 PALPPPPPPPPAPFFPFLPDSAPPQLPPPVTTPAPAGGA 90
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
PAV S TP+ Q PA PEP + P+
Sbjct: 442 PAVGSSTPSSSQARTAAAPAPPSPPEPPSPRDPA 475
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 92 LCLI-GCCPCACIPYCTDSCKDANHYCPNCNAYIGS 126
LCL+ GCCP C D P CN G+
Sbjct: 407 LCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGT 442
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 35 PAVPSVTPA--PPQQFVTVV----PAQQMGPEPTNTSCPSCSAAIVTRVDH 79
PA P+VTPA PPQQ V PA M + P+ + D+
Sbjct: 84 PAAPAVTPARPPPQQPAVAVAAPPPATTMATATEEVAAPATGNPMANAADN 134
>03_06_0189 + 32214702-32215154
Length = 150
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPT 62
PAVP+VT P + VPA + P P+
Sbjct: 106 PAVPAVTLPPMPAGIPAVPAVTLPPMPS 133
>03_01_0578 +
4270835-4271482,4271763-4272140,4272353-4272444,
4272637-4273240
Length = 573
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTR 76
P+ TP PP +T P + +P TS S V R
Sbjct: 284 PTPTPTPPPPAMTSPPKLNLAAKPNGTSGTVTSTPTVKR 322
>02_05_0256 +
27201483-27202499,27203297-27203375,27204617-27204946,
27205029-27205198
Length = 531
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 67 PSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCP 99
PSC A + DH V K A C GC P
Sbjct: 437 PSCHAVVALEYDHASVQKERWLA--GCPTGCVP 467
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.135 0.461
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,830,380
Number of Sequences: 37544
Number of extensions: 147732
Number of successful extensions: 751
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 65
length of query: 129
length of database: 14,793,348
effective HSP length: 74
effective length of query: 55
effective length of database: 12,015,092
effective search space: 660830060
effective search space used: 660830060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)
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