Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000886-TA|BGIBMGA000886-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
(129 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 33 0.099
SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 30 0.53
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 29 0.92
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06) 29 1.2
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21) 29 1.2
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 28 2.1
SB_11806| Best HMM Match : DUF77 (HMM E-Value=3.8) 28 2.1
SB_37298| Best HMM Match : rve (HMM E-Value=2.7e-29) 28 2.8
SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39) 27 4.9
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1) 27 4.9
SB_51971| Best HMM Match : rve (HMM E-Value=7.7e-31) 27 4.9
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_57258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 6.5
SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_44967| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13) 27 6.5
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 27 6.5
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 6.5
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072) 27 6.5
SB_48315| Best HMM Match : GASA (HMM E-Value=1.8) 27 6.5
SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079) 27 6.5
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 27 6.5
SB_27499| Best HMM Match : RVT_1 (HMM E-Value=9.2e-39) 27 6.5
SB_25381| Best HMM Match : ETF (HMM E-Value=9.9) 27 6.5
SB_15323| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 27 6.5
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 26 8.6
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.6
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 26 8.6
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.6
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.6
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 32.7 bits (71), Expect = 0.099
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 98 CPCACIPYCTDSCKDANHYCPNCNAYI 124
CPC + YC +C +YCP C +I
Sbjct: 419 CPCGHV-YCCQTCASNLYYCPLCKTFI 444
>SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 30.7 bits (66), Expect = 0.40
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEPTNT 64
P+ TPAP T VP Q GP PT T
Sbjct: 594 PAPTPAPAPVGTTAVPQQAQGPGPTVT 620
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 30.3 bits (65), Expect = 0.53
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 95 IGCCPCACIPYCTDSCKDANHYCPNCNAYI 124
I CP C P C+D C Y PN + ++
Sbjct: 705 IAPCPQVCAPACSDICCGFGAYAPNPDTHV 734
Score = 26.2 bits (55), Expect = 8.6
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 96 GCCPCACIPYCTDSC 110
G CP C P C +SC
Sbjct: 930 GSCPDVCAPQCMESC 944
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 29.5 bits (63), Expect = 0.92
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 37 VPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKT 85
+P V P PPQ TV P GP T S + I T P T T
Sbjct: 860 LPIVGPVPPQP-TTVAPPMTSGPTTTTPISTSAAPEITTANPGSPSTTT 907
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 29.5 bits (63), Expect = 0.92
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
PA P P PP V P +Q P PTN + P+
Sbjct: 1069 PAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPT 1102
>SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)
Length = 231
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 100 CACIPYCT---DSCKDANHYCP 118
C C PYCT D C D + +CP
Sbjct: 209 CRCDPYCTSFKDCCADFDTFCP 230
>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
Length = 959
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 100 CACIPYCT---DSCKDANHYCP 118
C C PYCT D C D + +CP
Sbjct: 142 CRCDPYCTSFKDCCADFDTFCP 163
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 42 PAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVT 83
PA P V PA P P T+ P + + T D P T
Sbjct: 96 PAQPDTDVPPPPATTSAPPPPTTTAPPATTSPPTTTDSPPTT 137
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 91 LLCLIGCCPCACIPYCTDSCKDANHYCPN 119
L C +GC P C P CT +C PN
Sbjct: 441 LTCPVGC-PSMCAPSCTPACCAEQQCWPN 468
>SB_11806| Best HMM Match : DUF77 (HMM E-Value=3.8)
Length = 144
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 32 GLYPAVPSVTPAPPQQFVTVVPAQQMG 58
G+YP++P V P PP Q T PA G
Sbjct: 10 GIYPSLPRVCPPPPPQTPT-APASTGG 35
>SB_37298| Best HMM Match : rve (HMM E-Value=2.7e-29)
Length = 350
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P++P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 287 PSIPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPGVASTPVRR 336
>SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)
Length = 1311
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 1112 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVAPTCTTESPPDVASTPVKR 1161
>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 52 VPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKT-HLFALLLCLIGCCPCACIPYCTDSC 110
V QQ ++ P+ S +T+ P +K + +C+ CP P C +
Sbjct: 161 VTTQQTKKPASSAFVPTTSDPCMTKACTAPYSKCMSVRGKAVCMCMSCPKMNKPVCGSNG 220
Query: 111 KDANHYC 117
KD N+ C
Sbjct: 221 KDYNNEC 227
>SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1)
Length = 166
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 61 PTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCL 94
P T+CP C IVTR T+ + LC+
Sbjct: 42 PVYTTCPFCQEKIVTRTSFKSGKYTYWTSACLCI 75
>SB_51971| Best HMM Match : rve (HMM E-Value=7.7e-31)
Length = 488
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 425 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVPSTPVKR 474
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 66 CPSCSAAIVTRVDHVPVTKTHLFALLLCLI-GCCPCACIPYCTDSCKDANHYCPNCNAYI 124
C +C V V HV V + + + + L C PC C PY P C ++
Sbjct: 328 CATCLCRYVAIVHHVYVVMSPVCTMFMSLCRQCVPCLC-PYVASVYHVYVVMSPVCTMFM 386
Query: 125 GS 126
S
Sbjct: 387 SS 388
>SB_57258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 130 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 179
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 1196 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 1245
>SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1413
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 1218 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 1267
>SB_44967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1284
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 1221 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 1270
>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
Length = 1052
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 85 THLFALLLCLIGCCPCACIPYCTDSCKDANHYCPNCNAYIG 125
T +F+ L+ C C+ Y D C D + YC + Y G
Sbjct: 214 TRMFSTEAQLMCSCDLQCV-YFYDCCADYHEYCSSYITYQG 253
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 26.6 bits (56), Expect = 6.5
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 33 LYPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVP 81
+ PAVP V PA P + V VVP + + P A+ V VP
Sbjct: 58 IVPAVPEVVPAVP-EVVPVVPEVEPAVPEVVPAVPEIVPAVPEVVPAVP 105
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 33 LYPAVPSVTPAPPQQFVTVVPAQQMGPEP 61
+ PAVP + PA P + V VP PEP
Sbjct: 149 IVPAVPEIVPAVP-EVVPAVPEVVAVPEP 176
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 595 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 644
>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
Length = 2374
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 42 PAPPQQFVTVVPAQQMGPEPTNTSCPS 68
PAP V+VV + GP+PT+ PS
Sbjct: 1206 PAPQDAPVSVVSDEAAGPDPTSMCGPS 1232
>SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)
Length = 340
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 130 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 179
>SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)
Length = 754
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 36 AVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
A S TP P Q T P M E +AI++R D PV +
Sbjct: 565 AFASATPRPAQSLATPYPCPAMECELCRLESEMDVSAILSRSDDSPVKR 613
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 888 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 937
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPV 82
P+ P V+ P V P ++ P+ + T P+C+ V PV
Sbjct: 1235 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPAVASTPV 1282
>SB_27499| Best HMM Match : RVT_1 (HMM E-Value=9.2e-39)
Length = 872
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 595 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 644
>SB_25381| Best HMM Match : ETF (HMM E-Value=9.9)
Length = 528
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 358 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 407
>SB_15323| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 44 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 93
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P+ P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 654 PSTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 703
>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
Length = 553
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
P P V+ P V P ++ P+ + T P+C+ V PV +
Sbjct: 490 PCTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRR 539
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 26.2 bits (55), Expect = 8.6
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 35 PAVPSVTPA--PPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHL 87
P+ PS TP+ PPQ V P + PTNT PS + R P T L
Sbjct: 57 PSPPSKTPSSVPPQAKVDETPV--LPSPPTNTPRPSRIPRLKRRRLQTPTRTTTL 109
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 26.2 bits (55), Expect = 8.6
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLF--ALLLC 93
P T P + T PA +PT T+ P+ + + P T T LLLC
Sbjct: 139 PPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKSTTTTPPATTTPTTRPLLLLC 196
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 26.2 bits (55), Expect = 8.6
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 44 PPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACI 103
P + +T++ Q GP T CPS + + P+ K + C +GC +C
Sbjct: 1472 PSKCCLTILEPLQEGPNAT-AYCPS--DCFESCKPNCPI-KCCPATAIKCPVGCSEHSCK 1527
Query: 104 PYCTDSC 110
P C C
Sbjct: 1528 PECPSKC 1534
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 98 CPCACIPYCTDSCKD 112
CP AC CTD C D
Sbjct: 844 CPEACAKRCTDDCPD 858
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.135 0.461
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,468,492
Number of Sequences: 59808
Number of extensions: 173667
Number of successful extensions: 715
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 91
length of query: 129
length of database: 16,821,457
effective HSP length: 74
effective length of query: 55
effective length of database: 12,395,665
effective search space: 681761575
effective search space used: 681761575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)
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