Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000886-TA|BGIBMGA000886-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
(129 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical pr... 70 5e-13
U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical pr... 62 2e-10
AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical... 52 2e-07
AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical... 50 4e-07
AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical ... 48 3e-06
Z81464-7|CAB03856.2| 102|Caenorhabditis elegans Hypothetical pr... 46 8e-06
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 45 2e-05
AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical... 41 2e-04
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 41 3e-04
AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical ... 39 0.001
AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical... 37 0.005
AL032626-7|CAA21544.1| 79|Caenorhabditis elegans Hypothetical ... 35 0.016
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut... 33 0.063
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion... 33 0.063
AF068714-9|AAC17810.1| 87|Caenorhabditis elegans Hypothetical ... 33 0.063
Z78544-5|CAB01759.2| 324|Caenorhabditis elegans Hypothetical pr... 32 0.15
AY398504-1|AAQ96213.1| 324|Caenorhabditis elegans SEL-7 protein. 32 0.15
AL031265-2|CAE48506.1| 324|Caenorhabditis elegans Hypothetical ... 32 0.15
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 31 0.26
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 0.34
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 29 0.78
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.0
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 1.0
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 1.0
AF047662-4|AAC04444.1| 145|Caenorhabditis elegans Hypothetical ... 29 1.4
Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical pr... 28 1.8
Z81573-1|CAB04625.2| 923|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical p... 28 2.4
Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical p... 28 2.4
Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical p... 28 2.4
Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical p... 28 2.4
Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical p... 28 2.4
AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor tyro... 28 2.4
AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor tyro... 28 2.4
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 28 2.4
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 28 2.4
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 28 2.4
U40943-5|AAK39235.2| 279|Caenorhabditis elegans Hypothetical pr... 27 4.2
AF067607-7|AAF98613.1| 433|Caenorhabditis elegans Serpentine re... 27 4.2
Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z81579-5|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z70205-9|CAA94122.2| 887|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z69664-8|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 26 7.3
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 26 7.3
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 26 7.3
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 26 7.3
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 26 7.3
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 26 7.3
AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical ... 26 7.3
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 26 9.6
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 26 9.6
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 26 9.6
>Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical
protein F36G3.3 protein.
Length = 141
Score = 70.1 bits (164), Expect = 5e-13
Identities = 32/74 (43%), Positives = 38/74 (51%)
Query: 56 QMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANH 115
++ P T CP C IVTR V T +F L L GC C +P+C SCKD H
Sbjct: 67 RLEPHATKLQCPYCRMDIVTRTKSVYGLLTWIFFAALFLFGCWCCCFLPFCLRSCKDIIH 126
Query: 116 YCPNCNAYIGSYNR 129
CPNC A IG + R
Sbjct: 127 TCPNCRAMIGVHRR 140
>U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical
protein F16F9.1 protein.
Length = 157
Score = 61.7 bits (143), Expect = 2e-10
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 45 PQQFVTVVPAQQMGPEPTN--TSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCAC 102
P V +V + P + T+C SC + T V + T + +L LI P A
Sbjct: 70 PNPTVVIVTTPKPAPSFASYETTCYSCGKYVHTLPKFVIGSLTWI-VFILVLICFFPLAF 128
Query: 103 IPYCTDSCKDANHYCPNCNAYIGSYNR 129
+P+C DSCKDA+HYCP CNA +G R
Sbjct: 129 VPFCLDSCKDAHHYCPRCNALLGIKKR 155
>AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical
protein Y87G2A.18 protein.
Length = 118
Score = 51.6 bits (118), Expect = 2e-07
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 61 PTNTSCPSCSAAIVTRVDHVP-VTKTHLFALL------LCLIGCCPCACIPYCTDSCKDA 113
P CP C IV+ ++ V V +FA+L L +I C C C+P+ D D
Sbjct: 43 PIEMDCPHCQNHIVSHIERVAGVLPWIIFAILAFLGIFLFIIPWCFC-CVPFFLDQLLDV 101
Query: 114 NHYCPNCNAYIGSYNR 129
NH CP C ++G +NR
Sbjct: 102 NHSCPACKKFLGRFNR 117
>AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical
protein Y87G2A.19 protein.
Length = 110
Score = 50.4 bits (115), Expect = 4e-07
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 57 MGPEPTNTSCPSCSAAIVTRVDHVP--VTKTHLFALLLCLIGCCPC--ACIPYCTDSCKD 112
+ P CP C T + V T F +L+ P +P+C ++ KD
Sbjct: 29 LSDRPQLLDCPRCKVHGETELRFVNGFFTYVSFFIILIFGFAILPLFFLWVPFCVETFKD 88
Query: 113 ANHYCPNCNAYIGSYNR 129
A HYCP+C A+IG+Y R
Sbjct: 89 AEHYCPSCRAWIGTYRR 105
>AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical
protein Y37D8A.6 protein.
Length = 132
Score = 47.6 bits (108), Expect = 3e-06
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 45 PQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIP 104
PQ+ + V EP CP C+ + TRV+ + L L L P C
Sbjct: 50 PQEIIIVGTKMAPSFEPYTEFCPRCNTNVCTRVERT-MGFCSWTMLFLGLFVFFPLLCC- 107
Query: 105 YCTDSCKDANHYCPNCNAYIGSYNR 129
+C D KD+ H CPNC + SY R
Sbjct: 108 FCLDGFKDSRHSCPNCGTIL-SYKR 131
>Z81464-7|CAB03856.2| 102|Caenorhabditis elegans Hypothetical
protein C08E8.1 protein.
Length = 102
Score = 46.0 bits (104), Expect = 8e-06
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 64 TSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPY----CTDSCKDANHYCPN 119
T CP+C A +T V+ T + L+C G C C P+ C D KD NH CP+
Sbjct: 34 TYCPTCEKAYMTSVN----THIGVCWWLICFFGTVLC-CFPFLFFLCCDVSKDVNHNCPS 88
Query: 120 CNAYIGSYNR 129
C + NR
Sbjct: 89 CGMLLAKKNR 98
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 44.8 bits (101), Expect = 2e-05
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEPT-NTSCPSCSAAIVTRVDHVPVTKTHLFALL-LCLI 95
P + P P + + V+ +Q + +C C + TRV+H L A L C
Sbjct: 34 PPIDPRPCGRVIGVISVKQAPTYSSYQENCTRCQTLVQTRVEHKIGIMWWLCATLSFCFF 93
Query: 96 GCCPCACIPYCTDSCKDANHYCPNCNAYIGSYNR 129
CC P KDA H+CPNC + + R
Sbjct: 94 FCCYLLFFPIT----KDAQHFCPNCGSLLAVRTR 123
>AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical
protein Y22D7AL.15 protein.
Length = 152
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 66 CPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPNCNAYIG 125
CP C ++ TR H T + + + C P C S KD H+CPNC +
Sbjct: 88 CPRCQTSVTTRTVHSIGTCWWIILFIGVFVFCWPILYCLCCAGS-KDVKHFCPNCGTMLA 146
Query: 126 SYNR 129
R
Sbjct: 147 CKKR 150
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 66 CPSCSAAIVTRVDHVPVTKTHLFALLLCLIGC---CPCACIPYCTDSCKDANHYCPNCNA 122
CP C I+T V T + L+C G C I C D KD +H CPNC
Sbjct: 36 CPKCQTTIMTSV----TTHIGMCWWLICFFGTFLFCWPILICLCFDVSKDVDHNCPNCGL 91
Query: 123 YIGSYNR 129
+ + NR
Sbjct: 92 LLATSNR 98
>AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical
protein B0348.2 protein.
Length = 86
Score = 39.1 bits (87), Expect = 0.001
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 60 EPTNTSCPSCSAAIVTRVDHVPVTKTHLFAL--LLCLIGCCPCACIPY--CTDSCKDANH 115
EP C C VTR T+T L A ++ +IGC I Y C DS KD H
Sbjct: 17 EPHQVFCQKCQCNQVTR------TETQLGACWWVVFIIGCLLFWPICYWLCCDSSKDTMH 70
Query: 116 YCPNCNAYI 124
YCP+C +
Sbjct: 71 YCPSCGTLL 79
>AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical
protein Y37D8A.26 protein.
Length = 88
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 66 CPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPNCNAYIG 125
C +C + T+ + V + + CL PC + + D +H CPNCN +G
Sbjct: 27 CTNCQETVTTKTEQV-FGMLNFALFITCLF--LPCFIVCFWCRCFMDVHHRCPNCNKSLG 83
Query: 126 SYNR 129
+R
Sbjct: 84 KRDR 87
>AL032626-7|CAA21544.1| 79|Caenorhabditis elegans Hypothetical
protein Y37D8A.8 protein.
Length = 79
Score = 35.1 bits (77), Expect = 0.016
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 60 EPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPN 119
+P CP C +VT V++ L +L+ + + C +DA H+CPN
Sbjct: 11 KPYQEYCPRCRCTVVTVVEYEMGCFAWLIIILIIFVAFFLIYIL--CCIDIRDAIHHCPN 68
Query: 120 CNAYIGSYNR 129
C + R
Sbjct: 69 CGMVLSRKKR 78
>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glutamate
receptor protein1 protein.
Length = 1025
Score = 33.1 bits (72), Expect = 0.063
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 84 KTHLFALLLCLIGCC----PCACIPYCTDSCKDANHYCPNCNAYIGSYNR 129
+T LFA L C + PC+ +P S D H CP C+ +G + R
Sbjct: 968 ETGLFAFLSCFLFAILFLWPCSPLPCFLSSFSDFVHICPLCSHIMGRFRR 1017
>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
ionotropic glutamatereceptor NMR-1 protein.
Length = 1025
Score = 33.1 bits (72), Expect = 0.063
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 84 KTHLFALLLCLIGCC----PCACIPYCTDSCKDANHYCPNCNAYIGSYNR 129
+T LFA L C + PC+ +P S D H CP C+ +G + R
Sbjct: 968 ETGLFAFLSCFLFAILFLWPCSPLPCFLSSFSDFVHICPLCSHIMGRFRR 1017
>AF068714-9|AAC17810.1| 87|Caenorhabditis elegans Hypothetical
protein B0348.1 protein.
Length = 87
Score = 33.1 bits (72), Expect = 0.063
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 60 EPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPN 119
EP + CP C TR++ A + P C C S KD HYCP+
Sbjct: 17 EPYSEYCPKCQCNHTTRMESRR-GNCWWIAFFIGFFLFFPI-CYWLCCQSSKDTLHYCPS 74
Query: 120 CNAYIGS 126
C + +
Sbjct: 75 CGTLLAT 81
>Z78544-5|CAB01759.2| 324|Caenorhabditis elegans Hypothetical
protein K04G11.2 protein.
Length = 324
Score = 31.9 bits (69), Expect = 0.15
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 37 VPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRV 77
+PS+ +PPQ ++ P Q P TN++ S+++ T +
Sbjct: 61 LPSIFTSPPQTVISEAPPQSFTPSATNSTSDKTSSSLKTEL 101
>AY398504-1|AAQ96213.1| 324|Caenorhabditis elegans SEL-7 protein.
Length = 324
Score = 31.9 bits (69), Expect = 0.15
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 37 VPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRV 77
+PS+ +PPQ ++ P Q P TN++ S+++ T +
Sbjct: 61 LPSIFTSPPQTVISEAPPQSFTPSATNSTSDKTSSSLKTEL 101
>AL031265-2|CAE48506.1| 324|Caenorhabditis elegans Hypothetical
protein K04G11.2 protein.
Length = 324
Score = 31.9 bits (69), Expect = 0.15
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 37 VPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRV 77
+PS+ +PPQ ++ P Q P TN++ S+++ T +
Sbjct: 61 LPSIFTSPPQTVISEAPPQSFTPSATNSTSDKTSSSLKTEL 101
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 31.1 bits (67), Expect = 0.26
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 37 VPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLC-LI 95
+P TP QQ A Q + + +S C A + + V + +++
Sbjct: 323 MPQCTPQCVQQQTICAAACQPSCQSSCSSNAQCVQACLPSCESSCVQQQQPSVVVVQDSQ 382
Query: 96 GCCPCACIPYCTDSCKDANHYC-----PNCNAYIGS 126
CP AC P C+ C A + C P+C + GS
Sbjct: 383 SSCPSACQPSCSQQCIQAQNLCQSACQPSCQSSCGS 418
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 30.7 bits (66), Expect = 0.34
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCP 67
P P+ +PAPP Q V QQ PT+ S P
Sbjct: 414 PPKPTPSPAPPAQKAQPVTQQQASAPPTSPSAP 446
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 29.5 bits (63), Expect = 0.78
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 37 VPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVP------VTKTHLFAL 90
+P P QQ VP P + PSCS + V + P T + L
Sbjct: 238 MPRCLPTCIQQIQISVPLPPPAPRCDSMCMPSCSPSCVQQYSLCPQQCRPMCTNACVTNL 297
Query: 91 LLCL-IGCCPCACIPYCTDSCKDANHYCP 118
+ + C AC+P CT SC CP
Sbjct: 298 QVSRPVSQCLPACMPSCTSSC--VQSMCP 324
Score = 27.5 bits (58), Expect = 3.2
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 54 AQQMGPEPTNTSC-PSCSAAIVTRVDHVPV-----TKTHLFALLLCLIGCCPCACIPYCT 107
A QM P P C P C ++ + R+ V + T + I C P AC+P C
Sbjct: 340 AVQMAPTPCAAQCMPLCESSCIARLSCVQTCMPACSPTCVQNYAAGPIQCAP-ACMPLCQ 398
Query: 108 DSC 110
+C
Sbjct: 399 PTC 401
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 63 NTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPNCN 121
N C SCS VT D T A ++ C C+P C +C + P+C+
Sbjct: 53 NCGCGSCSG-FVTCPDRCQPMCTQ--ACVMAKTSVCVDQCMPKCDSACINLVRSGPSCD 108
Score = 26.2 bits (55), Expect = 7.3
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 37 VPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIG 96
+ V P+ PQQ V Q + P+C+++ + + K + + +
Sbjct: 142 IQQVFPSCPQQCQPVCTPQCIQSIQVAIQRPTCASSCMPSCSQSCIQK---YEITVEQET 198
Query: 97 CCPCACIPYCTDSCKDANHYCPNC 120
C P AC+P C+ +C A C C
Sbjct: 199 CVP-ACMPACSSACVQA-VTCSTC 220
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
P S P VTVVP P P+++ PS S A
Sbjct: 298 PGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPA 335
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
P S P VTVVP P P+++ PS S A
Sbjct: 505 PGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPA 542
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
P S P VTVVP P P+++ PS S A
Sbjct: 505 PGTMSTVSGPTGSTVTVVPGSSTSPAPSSSPNPSSSPA 542
>AF047662-4|AAC04444.1| 145|Caenorhabditis elegans Hypothetical
protein T22B2.6 protein.
Length = 145
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 65 SCPSCSAAIVTRVDHVPVTKTHLFALLLC-LIGCCPCACIPYCTDSCKD 112
SC SCSA +V V V+ + + ++ C C+P C +C D
Sbjct: 19 SCSSCSAPVVAPAP-VAVSGYQPYGIAYYPVVPSCTAQCMPTCAPTCVD 66
>Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical
protein T23F6.1 protein.
Length = 160
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 12/62 (19%)
Query: 59 PEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCP 118
P P + P C + V VPVT T CC C C P CT++C +
Sbjct: 83 PPPCSCGTPGCMQCVQQTV-LVPVTTTT----------CCKC-CQPVCTNACTNGGGCSC 130
Query: 119 NC 120
C
Sbjct: 131 GC 132
>Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical
protein T02C1.1 protein.
Length = 160
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 93 CLIGCCPCACIPYCTDSCKDANHYCPNCNAYIGS 126
C+I C C +C +S + N CP C A+ G+
Sbjct: 19 CIIECGHSYC-RFCIESHLNINEKCPLCRAHTGN 51
>Z81573-1|CAB04625.2| 923|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 923
Score = 27.9 bits (59), Expect = 2.4
Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 37 VPSVTPAPPQQFVTVVPAQQMGPEPTNTSC-PSCSAAIVTRVDHVPVTKTHLFALLLCLI 95
VPS PA VP P P C P C + + + L C+
Sbjct: 373 VPSCMPACQPSCTNPVPLTTQAPVPVVNQCIPPCQPQCLQSCLEQHIQPQVVTQLPQCIP 432
Query: 96 GCCPCACIPYC 106
C P AC P C
Sbjct: 433 QCQP-ACEPQC 442
>Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 88 FALLLCLIGCCPCAC-IPYCTDSCKDANHYCPNCNAYIGS 126
F+LLL L+ CC C C + + N +C + + I S
Sbjct: 450 FSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINS 489
>Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 88 FALLLCLIGCCPCAC-IPYCTDSCKDANHYCPNCNAYIGS 126
F+LLL L+ CC C C + + N +C + + I S
Sbjct: 476 FSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINS 515
>Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 88 FALLLCLIGCCPCAC-IPYCTDSCKDANHYCPNCNAYIGS 126
F+LLL L+ CC C C + + N +C + + I S
Sbjct: 450 FSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINS 489
>Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 88 FALLLCLIGCCPCAC-IPYCTDSCKDANHYCPNCNAYIGS 126
F+LLL L+ CC C C + + N +C + + I S
Sbjct: 476 FSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINS 515
>Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical
protein C01G6.8c protein.
Length = 769
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 88 FALLLCLIGCCPCAC-IPYCTDSCKDANHYCPNCNAYIGS 126
F+LLL L+ CC C C + + N +C + + I S
Sbjct: 317 FSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINS 356
>AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 902
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 88 FALLLCLIGCCPCAC-IPYCTDSCKDANHYCPNCNAYIGS 126
F+LLL L+ CC C C + + N +C + + I S
Sbjct: 450 FSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINS 489
>AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 928
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 88 FALLLCLIGCCPCAC-IPYCTDSCKDANHYCPNCNAYIGS 126
F+LLL L+ CC C C + + N +C + + I S
Sbjct: 476 FSLLLLLLFCCACCCRAKKKSQKTRHQNAHCSSAPSVINS 515
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEP--TNTSCPSCSAAIVTRVDHVPV 82
P + P P +V + GPE T CP C + D +PV
Sbjct: 100 PRMNPNDPNMVRGIVVLPRRGPEARATEIKCPECRKPTLVPADGLPV 146
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 35 PAVPSVTPAPPQ--QFVTVVPAQQMGPEP 61
P V + PAPPQ Q V A QM PEP
Sbjct: 20 PGVSTPEPAPPQIKQEVDYQDAHQMAPEP 48
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEP--TNTSCPSCSAAIVTRVDHVPV 82
P + P P +V + GPE T CP C + D +PV
Sbjct: 100 PRMNPNDPNMVRGIVVLPRRGPEARATEIKCPECRKPTLVPADGLPV 146
>U40943-5|AAK39235.2| 279|Caenorhabditis elegans Hypothetical
protein F47F2.3 protein.
Length = 279
Score = 27.1 bits (57), Expect = 4.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 98 CPCACIPYCTDSCKDA 113
C C+PYCT C DA
Sbjct: 107 CRDECMPYCTPQCLDA 122
>AF067607-7|AAF98613.1| 433|Caenorhabditis elegans Serpentine
receptor, class t protein59 protein.
Length = 433
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 93 CLIGCCPCACIPYCTDSCKDANHYCPNCNAYIG 125
C +G C CI + C D NH P +IG
Sbjct: 255 CWMGSCS-TCILLAANRCSDINHNLPIRKMFIG 286
>Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical
protein F13H10.6 protein.
Length = 88
Score = 26.6 bits (56), Expect = 5.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 91 LLCLIGCCPCACIPYCTDSC 110
L+ L+ CC CI C D C
Sbjct: 69 LVALLACCAGCCIADCCDCC 88
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 87 LFALLLCLIGCCPCACIPYC 106
L ALL C GCC C C
Sbjct: 69 LVALLACCAGCCIADCCDCC 88
>Z81579-5|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 93 CLIGCCPCACIPYCTDSCKDANHYCPNC 120
C GC C C P C C+ C C
Sbjct: 80 CGCGCGCCCCRPRCCCCCRRCCTCCRTC 107
>Z70205-9|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCP 67
P +VTP P Q + P Q+M P PT T P
Sbjct: 83 PTPKTVTPMPVPQ---IPPHQKMTPNPTPTQNP 112
>Z69664-8|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 34 YPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
Y +T +P Q V+P G PT+ C S S A
Sbjct: 1330 YLTSDGLTVSPRQSLSVVIPTHPHGHSPTSPRCRSRSPA 1368
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 34 YPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
Y +T +P Q V+P G PT+ C S S A
Sbjct: 1330 YLTSDGLTVSPRQSLSVVIPTHPHGHSPTSPRCRSRSPA 1368
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCP 67
P +VTP P Q + P Q+M P PT T P
Sbjct: 83 PTPKTVTPMPVPQ---IPPHQKMTPNPTPTQNP 112
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHL 87
P P P P F++ T+T S AI+T P++ HL
Sbjct: 187 PLPPMHIPPPSVYFISTPSIYSTAKSSTSTVTSKLSKAIITPTPPQPLSSPHL 239
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 34 YPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
Y +T +P Q V+P G PT+ C S S A
Sbjct: 1207 YLTSDGLTVSPRQSLSVVIPTHPHGHSPTSPRCRSRSPA 1245
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 34 YPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
Y +T +P Q V+P G PT+ C S S A
Sbjct: 1330 YLTSDGLTVSPRQSLSVVIPTHPHGHSPTSPRCRSRSPA 1368
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 26.2 bits (55), Expect = 7.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 34 YPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
Y +T +P Q V+P G PT+ C S S A
Sbjct: 1330 YLTSDGLTVSPRQSLSVVIPTHPHGHSPTSPRCRSRSPA 1368
>AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical
protein Y50D4A.3 protein.
Length = 407
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 95 IGCCPCACIPYCTDSCKDANHYCPNCNAYIGSYNR 129
+G P +C PY D+ K A+ Y P I N+
Sbjct: 73 LGWGPSSCWPYSYDAFKIASRYFPEFGTSINVNNK 107
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 35 PAVPSVTPAP-----PQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
PA P+ PAP P T PA + P P + P+ AA
Sbjct: 105 PAEPASAPAPAPEAAPAPEPTPAPAPEAAPAPAPDAAPTAPAA 147
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 83 TKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPN 119
TKTH+ + + C C C +SC +C N
Sbjct: 1781 TKTHICQNMCQKVLNCGHTCSAKCGESCPPCKAFCTN 1817
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
P+ PAP V P P P P C +A
Sbjct: 168 PAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSA 202
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
P+ PAP V P P P P C +A
Sbjct: 301 PAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSA 335
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVD 78
PA + AP V P P PT P C +A D
Sbjct: 364 PAPAAAAEAPADAPVEQAPVAVPAPAPTAAPAPDCGSAAPAATD 407
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
P+ PAP V P P P P C +A
Sbjct: 618 PAAAPAPADAPVEQAPVAVPAPAPAAAPAPDCGSA 652
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.135 0.461
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,682
Number of Sequences: 27539
Number of extensions: 129693
Number of successful extensions: 710
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 101
length of query: 129
length of database: 12,573,161
effective HSP length: 74
effective length of query: 55
effective length of database: 10,535,275
effective search space: 579440125
effective search space used: 579440125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)
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