GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000886-TA|BGIBMGA000886-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
         (129 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   7.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 63  NTSCPSCSAAIVTRVDHVPVTKT 85
           +T+  +CS A+  + + VP+T +
Sbjct: 513 STATSTCSLAVAKQQNQVPLTSS 535


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 110 CKDANHYC 117
           CKDA+ YC
Sbjct: 621 CKDASSYC 628


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,961
Number of Sequences: 429
Number of extensions: 1452
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 129
length of database: 140,377
effective HSP length: 51
effective length of query: 78
effective length of database: 118,498
effective search space:  9242844
effective search space used:  9242844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)