Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000886-TA|BGIBMGA000886-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
(129 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 29 0.99
At3g47400.1 68416.m05154 pectinesterase family protein similar t... 27 3.0
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 27 3.0
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 27 3.0
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 27 4.0
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 27 4.0
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 27 4.0
At2g11520.1 68415.m01242 protein kinase family protein contains ... 27 4.0
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 27 4.0
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 27 5.3
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 5.3
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 5.3
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 27 5.3
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 27 5.3
At4g34150.1 68417.m04846 C2 domain-containing protein similar to... 26 7.0
At1g02405.1 68414.m00187 proline-rich family protein contains pr... 26 7.0
At5g55507.1 68418.m06913 hydroxyproline-rich glycoprotein family... 26 9.3
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 26 9.3
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ... 26 9.3
At2g45250.1 68415.m05633 expressed protein 26 9.3
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 26 9.3
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 29.1 bits (62), Expect = 0.99
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSC-PSCSAAIVTRVDHVPVTKTHL------ 87
P V T PP Q T P PT P + TR+D VP+ T
Sbjct: 171 PPVKPPTTTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVPLCGTRCGQHSRK 230
Query: 88 -FALLLCLIGCCPCACIPYCTDSCKDANHYCPNCNA 122
+ C+ C C C+P T K+ C +C A
Sbjct: 231 NVCMRACVTCCYRCKCVPPGTYGNKEK---CGSCYA 263
>At3g47400.1 68416.m05154 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Vitis vinifera
GI:15081598, Lycopersicon esculentum SP|Q43143
SP|P14280; contains Pfam profile PF01095 pectinesterase
Length = 594
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 41 TPAPPQQFVTVVPAQQMGPEPTNTSCPSCSA 71
T APP V P + P PT TS PS ++
Sbjct: 32 TDAPPPWDHNVSPPPETAPSPTPTSSPSTTS 62
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTR 76
P P P PP+ V A Q P P+NT S S V R
Sbjct: 74 PPPPQPPPPPPRPCFNGVSAAQRLPLPSNTPTRSLSLISVPR 115
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 33 LYPAVPSVTPAPPQQFVTVVPAQQMGPE 60
L+ VP P PPQ FV VV + +G E
Sbjct: 1276 LHFTVPIFEPLPPQYFVRVVSDKWLGSE 1303
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam
profile PF00234 Protease inhibitor/seed storage/LTP
family
Length = 375
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
P P+ PAPP P Q P P T+ P+
Sbjct: 54 PTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPA 87
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/51 (31%), Positives = 20/51 (39%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKT 85
P++ TPA V P + P PT T P + VT PV T
Sbjct: 104 PSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPAT 154
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/51 (31%), Positives = 20/51 (39%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKT 85
P++ TPA V P + P PT T P + VT PV T
Sbjct: 104 PSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPAT 154
>At2g11520.1 68415.m01242 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 510
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 75 TRVDHVPVTKTHLFALLLCLIGCCPC 100
T HV V+ LLLC CCPC
Sbjct: 118 TEYSHVKVSIAGSGFLLLCCALCCPC 143
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 27.1 bits (57), Expect = 4.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 106 CTDSCKDANHYCPNCNAYIGSY 127
C+ C + ++ CP C+ IG+Y
Sbjct: 77 CSSCCTNVSNKCPYCSLAIGNY 98
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
P PS + +P Q T P P P ++ P SAA
Sbjct: 276 PKSPSPSSSPAQSPATPSPMTPQSPSPVSSPSPDQSAA 313
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 35 PAVPSVTPAPPQQFVTVVP---AQQMGPEPTNTSCP 67
P+ P+ TP P Q V+ P A P PT T+ P
Sbjct: 99 PSTPATTPPAPPQTVSPPPPPDASPSPPAPTTTNPP 134
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCP 67
P+ P TP+PP + + P PT T+ P
Sbjct: 139 PSPPGETPSPPGETPSPPKPSPSTPTPTTTTSP 171
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPS 68
P+ P VTP PP V P + P P S PS
Sbjct: 193 PSPPDVTPTPPTPSVPSPP--DVTPTPPTPSVPS 224
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 35 PAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAA 72
P+ P VTP PP V P P PT S P+ S +
Sbjct: 208 PSPPDVTPTPPTPSVPSPPDVTPTP-PTPPSVPTPSGS 244
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 66 CPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCP 99
C +CS I ++ H P+ LFAL+ +G CP
Sbjct: 217 CSNCSHGI--KLLHKPIGFLMLFALISTQLGLCP 248
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 34 YPAVPSVTPAPPQQF----VTVVPAQQMGPEPTNTSCPSCSAAIVTRV 77
YP P+++ P + P Q MG PT TS P+ + VT V
Sbjct: 167 YPQNPALSVPPAAHLGYRPQPLFPVQNMGMTPTPTSAPAIQPSPVTGV 214
>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
calcium-dependent protein kinase [Dunaliella
tertiolecta] GI:6644464; contains Pfam profile PF00168:
C2 domain
Length = 247
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 34 YPAVPSVTPAPPQQFVTVVPAQQMGPEPT 62
YP +PS P PP + P Q P+P+
Sbjct: 205 YPPIPSAYPPPPPS--SAYPPQPYPPQPS 231
>At1g02405.1 68414.m00187 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 134
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEPTNTSCP 67
P P+PP T P P P +SCP
Sbjct: 49 PPPPPSPPPPSCTPSPPPPSPPPPKKSSCP 78
>At5g55507.1 68418.m06913 hydroxyproline-rich glycoprotein family
protein supported by full-length cDNA (cDNA confirms
gene suggested by AE93TR-Brassica genomic sequence
alignment) Awaiting Genbank accession.
Length = 91
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 40 VTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTK 84
VTP PPQ F+ P QQ P S P + P T+
Sbjct: 6 VTPPPPQNFLP--PWQQYSPMYQQVSAPMSPMSQYMNYQQFPYTE 48
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 96 GCCPCACIPYCTDSCKDANHYCPNCNAYIGS 126
GCCP C D+ H P C+ G+
Sbjct: 402 GCCPLEAATCCDDNSSCCPHEYPVCDVNRGT 432
>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 709
Score = 25.8 bits (54), Expect = 9.3
Identities = 20/72 (27%), Positives = 28/72 (38%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGC 97
PS P P F V G E ++ S PSC + +V VT L + +I
Sbjct: 631 PSEIPLLPVGFSVVPVNPSDGVEGSSVSSPSCLLTVAIQVLGSNVTTERLDLSTVSVINH 690
Query: 98 CPCACIPYCTDS 109
CA + T +
Sbjct: 691 RICATVNRITSA 702
>At2g45250.1 68415.m05633 expressed protein
Length = 204
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 38 PSVTPAPPQQFVTVVPAQQMGPEPTNTS 65
P T APPQ + PAQ EPT TS
Sbjct: 96 PPPTKAPPQ--IPSSPAQAQAQEPTPTS 121
>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 303
Score = 25.8 bits (54), Expect = 9.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 106 CTDSCKDANHYCPNCNAYIGSY 127
C+ CK + CP C+ IG +
Sbjct: 70 CSSCCKKVKYKCPYCSLRIGFF 91
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.135 0.461
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,265
Number of Sequences: 28952
Number of extensions: 105439
Number of successful extensions: 443
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 35
length of query: 129
length of database: 12,070,560
effective HSP length: 73
effective length of query: 56
effective length of database: 9,957,064
effective search space: 557595584
effective search space used: 557595584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)
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