GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000885-TA|BGIBMGA000885-PA|undefined
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.4  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    24   9.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 61  PTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPTARTPAKMQTITVRIA 120
           PT++S P  +    T    VP T T + +  L    C     +P   TP     +T    
Sbjct: 415 PTSSSTPLTTTNCTTSTS-VPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNC 473

Query: 121 T 121
           T
Sbjct: 474 T 474



 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 64  TSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPTARTPAKMQTITVRIAT 121
           TS P  +    T    +P T T + +  L    C     +P   TP      T+  +T
Sbjct: 464 TSTPLTTTNCTTSTS-IPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSST 520


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 54  AQQMGPEPTNTSCPSCSAAIVTR 76
           AQ+  P+P N S P      VTR
Sbjct: 602 AQENSPQPVNGSSPPYELVFVTR 624


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.133    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,774
Number of Sequences: 5004
Number of extensions: 11936
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 4
length of query: 136
length of database: 2,362,478
effective HSP length: 66
effective length of query: 70
effective length of database: 2,032,214
effective search space: 142254980
effective search space used: 142254980
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 49 (23.8 bits)