GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000885-TA|BGIBMGA000885-PA|undefined
         (136 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0115 + 18103964-18104263,18105841-18105870,18106167-18106292     28   3.0  
04_04_0138 + 23067885-23068245,23068393-23068634                       27   4.0  
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094...    26   9.2  
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049...    26   9.2  

>05_04_0115 + 18103964-18104263,18105841-18105870,18106167-18106292
          Length = 151

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 59  PEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPTARTPAKM 112
           P   NTS P    A +     VP+T   LF   + +    P A + TA  PA M
Sbjct: 9   PSAANTSEPMLGQAAIAATTAVPMTNFQLFGSTVLV----PVASMATAIAPAAM 58


>04_04_0138 + 23067885-23068245,23068393-23068634
          Length = 200

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 49  VTVVPAQQMGPEP-TNTSCPSCSAAIVTRVDHVPV 82
           VT  P QQM P P T++  P  S+ +    D VPV
Sbjct: 153 VTRAPPQQMTPSPKTSSQTPEYSSGLKLIADCVPV 187


>09_04_0070 +
           14308446-14308511,14308844-14309005,14309420-14309473,
           14310009-14310073,14310391-14310459,14310590-14310767,
           14311085-14311231,14311316-14311432,14311507-14311619,
           14311703-14311781,14311892-14312020
          Length = 392

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 50  TVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFA 89
           T VP     P PT T+ P+ + A+ +  D+     ++L A
Sbjct: 115 TTVPVTVSAPTPTATASPAPAVAVSSEADNYGQATSNLVA 154


>02_05_0256 +
           27201483-27202499,27203297-27203375,27204617-27204946,
           27205029-27205198
          Length = 531

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 67  PSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCP 99
           PSC A +    DH  V K    A   C  GC P
Sbjct: 437 PSCHAVVALEYDHASVQKERWLA--GCPTGCVP 467


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.133    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,489
Number of Sequences: 37544
Number of extensions: 90001
Number of successful extensions: 319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 4
length of query: 136
length of database: 14,793,348
effective HSP length: 75
effective length of query: 61
effective length of database: 11,977,548
effective search space: 730630428
effective search space used: 730630428
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)