GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000885-TA|BGIBMGA000885-PA|undefined
         (136 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1)                  27   5.4  
SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)                  27   7.2  

>SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1)
          Length = 166

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 61 PTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCL 94
          P  T+CP C   IVTR        T+  +  LC+
Sbjct: 42 PVYTTCPFCQEKIVTRTSFKSGKYTYWTSACLCI 75


>SB_43647| Best HMM Match : VPS9 (HMM E-Value=1.1e-12)
          Length = 849

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 103 IPTARTPAKMQTITVRIATRTL 124
           IP+A + AK+   TVR+ TRTL
Sbjct: 546 IPSAESTAKVSISTVRLNTRTL 567


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.133    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,196
Number of Sequences: 59808
Number of extensions: 115100
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 2
length of query: 136
length of database: 16,821,457
effective HSP length: 75
effective length of query: 61
effective length of database: 12,335,857
effective search space: 752487277
effective search space used: 752487277
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)