GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000885-TA|BGIBMGA000885-PA|undefined
         (136 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11520.1 68415.m01242 protein kinase family protein contains ...    27   4.4  
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit...    27   4.4  

>At2g11520.1 68415.m01242 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 510

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 75  TRVDHVPVTKTHLFALLLCLIGCCPC 100
           T   HV V+      LLLC   CCPC
Sbjct: 118 TEYSHVKVSIAGSGFLLLCCALCCPC 143


>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
           to DNA Helicase recQl4B [Arabidopsis thaliana]
           GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00570: HRDC domain
          Length = 1024

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 66  CPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPTARTPAKMQTITVRIATRTLE 125
           C +CS  I  ++ H P+    LFAL+   +G CP A     +    +  I+  I   T +
Sbjct: 217 CSNCSHGI--KLLHKPIGFLMLFALISTQLGLCPEASTHVEQMKDTLLAISNEILDNTYD 274


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.133    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,577
Number of Sequences: 28952
Number of extensions: 63770
Number of successful extensions: 197
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 2
length of query: 136
length of database: 12,070,560
effective HSP length: 74
effective length of query: 62
effective length of database: 9,928,112
effective search space: 615542944
effective search space used: 615542944
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)