Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000884-TA|BGIBMGA000884-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor, IPR007087|Zinc finger, C2H2-type
         (164 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   3.9  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   5.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.9  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 122 LFALILCLIGCWPCACIPYCMESCQNATHYCP 153
           +F+  +     W CA + Y +       +Y P
Sbjct: 38  VFSFAVTFFSAWICALVNYNVSEISENFYYLP 69


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 87  VQARPMGPEPSSLTCP 102
           V+ RP  PEP    CP
Sbjct: 19  VRKRPHSPEPYPPRCP 34


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 13/62 (20%), Positives = 32/62 (51%)

Query: 72  VPIVPVVAPQQFVTVVQARPMGPEPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIG 131
           VP V  +  ++  ++ +   MG + +S+T  + + V+   V+++ +      ++IL  +G
Sbjct: 197 VPGVVAMFSRKPCSINENLKMGLDIASITAQASSFVVWPLVENNPTLYLIPVSVILISVG 256

Query: 132 CW 133
            W
Sbjct: 257 WW 258


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 13/62 (20%), Positives = 32/62 (51%)

Query: 72  VPIVPVVAPQQFVTVVQARPMGPEPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIG 131
           VP V  +  ++  ++ +   MG + +S+T  + + V+   V+++ +      ++IL  +G
Sbjct: 197 VPGVVAMFSRKPCSINENLKMGLDIASITAQASSFVVWPLVENNPTLYLIPVSVILISVG 256

Query: 132 CW 133
            W
Sbjct: 257 WW 258


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.135    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,550
Number of Sequences: 317
Number of extensions: 1222
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 164
length of database: 114,650
effective HSP length: 52
effective length of query: 112
effective length of database: 98,166
effective search space: 10994592
effective search space used: 10994592
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 40 (20.2 bits)