Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000884-TA|BGIBMGA000884-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor, IPR007087|Zinc finger, C2H2-type
         (164 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.2  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 139 PYCMESCQNATHYCPNCHAYIGT 161
           PY + +C N T Y  NC++ + T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.135    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,107
Number of Sequences: 5004
Number of extensions: 19008
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 1
length of query: 164
length of database: 2,362,478
effective HSP length: 68
effective length of query: 96
effective length of database: 2,022,206
effective search space: 194131776
effective search space used: 194131776
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 50 (24.2 bits)