GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000884-TA|BGIBMGA000884-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor, IPR007087|Zinc finger, C2H2-type
         (164 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1043 + 8228201-8228209,8228364-8228439,8228527-8228903           29   1.8  
02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928...    27   7.4  

>01_01_1043 + 8228201-8228209,8228364-8228439,8228527-8228903
          Length = 153

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 135 CACIPYCMESCQNATHYCPNCHAY 158
           CAC+  C  SC ++    P+C+ Y
Sbjct: 102 CACVKVCAASCHHSPCSLPDCYFY 125


>02_03_0408 -
           18692176-18692278,18692590-18692669,18692764-18692890,
           18694016-18694051,18695832-18696085
          Length = 199

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 11/70 (15%)

Query: 96  PSSLTCPSCNAVIVTRVQHDAS--------SKTHLFALILCLIGCWPCACIPYC--MESC 145
           P+   C +C A  V+ ++ + +        SK  L +++ C++      C   C  M+  
Sbjct: 68  PAPFHCQACGAAAVSSLRSEDTIFFPVHGRSKPSLASVVACMMPFMMGVCF-LCPSMDCL 126

Query: 146 QNATHYCPNC 155
            +  HYCP+C
Sbjct: 127 WHKYHYCPSC 136


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.135    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,145,258
Number of Sequences: 37544
Number of extensions: 133567
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 2
length of query: 164
length of database: 14,793,348
effective HSP length: 77
effective length of query: 87
effective length of database: 11,902,460
effective search space: 1035514020
effective search space used: 1035514020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)