Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000884-TA|BGIBMGA000884-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor, IPR007087|Zinc finger, C2H2-type
(164 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 31 0.62
SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06) 29 1.4
SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017) 29 2.5
SB_19920| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1) 28 4.4
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_35962| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 27 7.6
SB_22333| Best HMM Match : COLFI (HMM E-Value=0.0083) 27 7.6
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 30.7 bits (66), Expect = 0.62
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 134 PCACIPYCMESCQNATHYCPNCHAYI 159
PC + YC ++C + +YCP C +I
Sbjct: 420 PCGHV-YCCQTCASNLYYCPLCKTFI 444
>SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)
Length = 357
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 112 VQHDASSKTH-LFALILCLIGCWPCACIPYCMESCQ----NATHY--CPNC-HAYI-GTY 162
+Q + S H F IL + C C + YC E C +A HY C N H Y+ G +
Sbjct: 273 LQEQSKSHCHQCFVHILAPLPCSYCTTVRYCSEKCAKESWDAYHYAECTNLEHVYVAGLF 332
Query: 163 T 163
T
Sbjct: 333 T 333
>SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017)
Length = 294
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 112 VQHDASSKTH-LFALILCLIGCWPCACIPYCMESCQ----NATHY--CPNC-HAYI-GTY 162
+Q + S H F IL + C C + YC E C +A HY C N H Y+ G Y
Sbjct: 69 LQEQSKSHCHQCFVHILAPLPCSYCTTVRYCSEKCAKESWDAYHYAECMNLEHVYVAGKY 128
>SB_19920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1035
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 79 APQQFVTVVQARPMGPEPSSLTCP--SCNAVIVTRVQHDASSKTHL 122
AP + + + +G P + C S N + VT V HD+ ++TH+
Sbjct: 898 APSGYYVIDPSGDLGEPPFPVVCDMMSHNGIGVTVVGHDSEARTHV 943
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 79 APQQFVTVVQARPMGPEPSSLTCP--SCNAVIVTRVQHDASSKTHL 122
AP + + + +G P + C S N + VT V HD+ ++TH+
Sbjct: 342 APSGYYVIDPSGDLGEPPFPVFCDMMSHNGIGVTVVGHDSEARTHV 387
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 79 APQQFVTVVQARPMGPEPSSLTCP--SCNAVIVTRVQHDASSKTHL 122
AP + + + +G P + C S N + VT V HD+ ++TH+
Sbjct: 641 APSGYYVIDPSGDLGEPPFPVFCDMMSHNGIGVTVVGHDSEARTHV 686
>SB_12923| Best HMM Match : zf-C3HC4 (HMM E-Value=1.1)
Length = 166
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 96 PSSLTCPSCNAVIVTRVQHDASSKTHLFALILCL 129
P TCP C IVTR + T+ + LC+
Sbjct: 42 PVYTTCPFCQEKIVTRTSFKSGKYTYWTSACLCI 75
>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 128 CLIGCWPCACIPYCMESCQNATHYCP 153
C C+ C P C SC++ T CP
Sbjct: 159 CCSQCFWFMCGPLCCYSCESGTDVCP 184
>SB_35962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 79 APQQFVTVVQARPMGPEPSSLTCP--SCNAVIVTRVQHDASSKTHL 122
AP + + + +G P + C S N + VT V HD+ ++TH+
Sbjct: 511 APSGYYVIDPSGDLGEPPFPVFCDMMSHNGIGVTVVGHDSEARTHV 556
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 116 ASSKTHLFALILCLIGCWPCACIP-------YC--MESCQNATHYC---PNCHAYIGTYT 163
AS + H+ A IG + CAC P C ++ C TH C C IG+YT
Sbjct: 765 ASDRCHVNATCTNTIGSYICACKPGFTGNGFNCTDVDECTMGTHSCHANAQCDNTIGSYT 824
>SB_22333| Best HMM Match : COLFI (HMM E-Value=0.0083)
Length = 339
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 79 APQQFVTVVQARPMGPEPSSLTCP--SCNAVIVTRVQHDASSKTHL 122
AP + + + +G P + C S N + VT V HD+ +TH+
Sbjct: 69 APSGYYVIDPSGDLGEPPFPVFCDMMSHNGIGVTVVGHDSEGRTHV 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.326 0.135 0.455
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,974,945
Number of Sequences: 59808
Number of extensions: 162698
Number of successful extensions: 594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 12
length of query: 164
length of database: 16,821,457
effective HSP length: 77
effective length of query: 87
effective length of database: 12,216,241
effective search space: 1062812967
effective search space used: 1062812967
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)
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