Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000884-TA|BGIBMGA000884-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor, IPR007087|Zinc finger, C2H2-type
(164 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical pr... 73 1e-13
U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical pr... 59 2e-09
AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical... 49 1e-06
AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical ... 47 8e-06
AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical... 43 9e-05
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 43 9e-05
AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical... 42 2e-04
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut... 42 2e-04
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion... 42 2e-04
AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical ... 42 2e-04
AL032626-7|CAA21544.1| 79|Caenorhabditis elegans Hypothetical ... 36 0.014
AF068714-9|AAC17810.1| 87|Caenorhabditis elegans Hypothetical ... 36 0.019
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 35 0.033
Z81464-7|CAB03856.2| 102|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 31 0.54
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 30 0.71
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 30 0.71
AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical... 30 0.71
AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical ... 30 0.71
Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical pr... 30 0.94
Z81579-5|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 27 5.0
AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in ... 27 5.0
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical p... 27 6.6
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 27 6.6
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 27 6.6
>Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical
protein F36G3.3 protein.
Length = 141
Score = 72.5 bits (170), Expect = 1e-13
Identities = 32/90 (35%), Positives = 44/90 (48%)
Query: 73 PIVPVVAPQQFVTVVQARPMGPEPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGC 132
P+ +A T + P + L CP C IVTR + T +F L L GC
Sbjct: 49 PVYTTLASGPMPTSTIIIRLEPHATKLQCPYCRMDIVTRTKSVYGLLTWIFFAALFLFGC 108
Query: 133 WPCACIPYCMESCQNATHYCPNCHAYIGTY 162
W C +P+C+ SC++ H CPNC A IG +
Sbjct: 109 WCCCFLPFCLRSCKDIIHTCPNCRAMIGVH 138
>U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical
protein F16F9.1 protein.
Length = 157
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 74 IVPVVAPQQFVTVVQARPMGPEPSSL--TCPSCNAVIVTRVQHDASSKTHLFALILCLIG 131
++P P V +V P +S TC SC + T + S T + IL LI
Sbjct: 64 VLPGGQPNPTVVIVTTPKPAPSFASYETTCYSCGKYVHTLPKFVIGSLTWI-VFILVLIC 122
Query: 132 CWPCACIPYCMESCQNATHYCPNCHAYIG 160
+P A +P+C++SC++A HYCP C+A +G
Sbjct: 123 FFPLAFVPFCLDSCKDAHHYCPRCNALLG 151
>AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical
protein Y87G2A.19 protein.
Length = 110
Score = 49.2 bits (112), Expect = 1e-06
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 92 MGPEPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIG--CWPC--ACIPYCMESCQN 147
+ P L CP C T ++ T++ I+ + G P +P+C+E+ ++
Sbjct: 29 LSDRPQLLDCPRCKVHGETELRFVNGFFTYVSFFIILIFGFAILPLFFLWVPFCVETFKD 88
Query: 148 ATHYCPNCHAYIGTY 162
A HYCP+C A+IGTY
Sbjct: 89 AEHYCPSCRAWIGTY 103
>AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical
protein Y37D8A.6 protein.
Length = 132
Score = 46.8 bits (106), Expect = 8e-06
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 73 PIVPVVAPQQFVTVVQARPMGPEPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGC 132
P+ V PQ+ + V EP + CP CN + TRV+ + L L L
Sbjct: 43 PVYVVQQPQEIIIVGTKMAPSFEPYTEFCPRCNTNVCTRVERTMGFCSWTM-LFLGLFVF 101
Query: 133 WPCACIPYCMESCQNATHYCPNC 155
+P C +C++ +++ H CPNC
Sbjct: 102 FPLLCC-FCLDGFKDSRHSCPNC 123
>AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical
protein Y87G2A.18 protein.
Length = 118
Score = 43.2 bits (97), Expect = 9e-05
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 76 PVVAPQQFVTVVQAR--PMGPEPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGC- 132
P PQ + +R P P + CP C IV+ ++ A + IL +G
Sbjct: 21 PEPNPQNDSRYITSRTSPYNVMPIEMDCPHCQNHIVSHIERVAGVLPWIIFAILAFLGIF 80
Query: 133 -----WPCACIPYCMESCQNATHYCPNCHAYIGTY 162
W C+P+ ++ + H CP C ++G +
Sbjct: 81 LFIIPWCFCCVPFFLDQLLDVNHSCPACKKFLGRF 115
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 43.2 bits (97), Expect = 9e-05
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 73 PIVPVVAPQQFVT-VVQARPMGPEPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIG 131
PI V+ P + V VV+ P+ P CP C I+T V L +
Sbjct: 8 PIPHVIQPVKVVRHVVKETPI-KTPYLDVCPKCQTTIMTSVTTHIGMCWWLICFFGTFLF 66
Query: 132 CWPCACIPYCMESCQNATHYCPNCHAYIGT 161
CWP I C + ++ H CPNC + T
Sbjct: 67 CWPIL-ICLCFDVSKDVDHNCPNCGLLLAT 95
>AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical
protein Y22D7AL.15 protein.
Length = 152
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 101 CPSCNAVIVTRVQHDASSKTHLFALILCLIGCWPCA-CIPYCMESCQNATHYCPNC 155
CP C + TR H + + I + CWP C+ C ++ H+CPNC
Sbjct: 88 CPRCQTSVTTRTVHSIGTCWWIILFIGVFVFCWPILYCL--CCAGSKDVKHFCPNC 141
>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glutamate
receptor protein1 protein.
Length = 1025
Score = 41.9 bits (94), Expect = 2e-04
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 95 EPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPN 154
+P L C C ++ + V + L + ++ WPC+ +P + S + H CP
Sbjct: 948 KPLVLFCSRCRNIVESDVHRETGLFAFLSCFLFAILFLWPCSPLPCFLSSFSDFVHICPL 1007
Query: 155 CHAYIGTY 162
C +G +
Sbjct: 1008 CSHIMGRF 1015
>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
ionotropic glutamatereceptor NMR-1 protein.
Length = 1025
Score = 41.9 bits (94), Expect = 2e-04
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 95 EPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPN 154
+P L C C ++ + V + L + ++ WPC+ +P + S + H CP
Sbjct: 948 KPLVLFCSRCRNIVESDVHRETGLFAFLSCFLFAILFLWPCSPLPCFLSSFSDFVHICPL 1007
Query: 155 CHAYIGTY 162
C +G +
Sbjct: 1008 CSHIMGRF 1015
>AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical
protein B0348.2 protein.
Length = 86
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 95 EPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPN 154
EP + C C VTR + + + +I CL+ WP C C +S ++ HYCP+
Sbjct: 17 EPHQVFCQKCQCNQVTRTETQLGACWWVVFIIGCLL-FWPI-CYWLCCDSSKDTMHYCPS 74
Query: 155 C 155
C
Sbjct: 75 C 75
>AL032626-7|CAA21544.1| 79|Caenorhabditis elegans Hypothetical
protein Y37D8A.8 protein.
Length = 79
Score = 35.9 bits (79), Expect = 0.014
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 95 EPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPN 154
+P CP C +VT V+++ L +++ + + + C ++A H+CPN
Sbjct: 11 KPYQEYCPRCRCTVVTVVEYEMGCFAWLIIILIIFVAFFLIYIL--CCIDIRDAIHHCPN 68
Query: 155 C 155
C
Sbjct: 69 C 69
>AF068714-9|AAC17810.1| 87|Caenorhabditis elegans Hypothetical
protein B0348.1 protein.
Length = 87
Score = 35.5 bits (78), Expect = 0.019
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 95 EPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPN 154
EP S CP C TR++ A + +P C C +S ++ HYCP+
Sbjct: 17 EPYSEYCPKCQCNHTTRME-SRRGNCWWIAFFIGFFLFFPI-CYWLCCQSSKDTLHYCPS 74
Query: 155 CHAYIGT 161
C + T
Sbjct: 75 CGTLLAT 81
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 34.7 bits (76), Expect = 0.033
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 101 CPSCNAVIVTRVQHDASSKTHLFA-LILCLIGCWPCACIPYCMESCQNATHYCPNCHAYI 159
C C ++ TRV+H L A L C C C ++A H+CPNC + +
Sbjct: 63 CTRCQTLVQTRVEHKIGIMWWLCATLSFCFFFC----CYLLFFPITKDAQHFCPNCGSLL 118
Query: 160 GTYT 163
T
Sbjct: 119 AVRT 122
>Z81464-7|CAB03856.2| 102|Caenorhabditis elegans Hypothetical
protein C08E8.1 protein.
Length = 102
Score = 30.7 bits (66), Expect = 0.54
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 86 VVQARPMGPEPSSLT-CPSCNAVIVTRVQHDASSKTHLFAL--ILCLIGCWPCACIPY-- 140
VV+ P+ + S LT CP+C +T V TH+ ++C G C C P+
Sbjct: 22 VVKETPL--KTSFLTYCPTCEKAYMTSVN------THIGVCWWLICFFGTVLC-CFPFLF 72
Query: 141 --CMESCQNATHYCPNC 155
C + ++ H CP+C
Sbjct: 73 FLCCDVSKDVNHNCPSC 89
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 30.7 bits (66), Expect = 0.54
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 95 EPSSLTCPSCNAVIVTR 111
+PS +TCP CNAV++T+
Sbjct: 7 KPSLVTCPQCNAVVLTK 23
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 30.3 bits (65), Expect = 0.71
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 95 EPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLI--GCWPCACIPYCMESCQNATHY 151
+PS L PSC T V+ A + H+ A I L G W + +P C+E +N TH+
Sbjct: 185 QPSVL--PSCGGG-ETNVERAAKREAHVLARIAELRKNGLWSNSRLPKCVEPERNKTHW 240
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 30.3 bits (65), Expect = 0.71
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 95 EPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLI--GCWPCACIPYCMESCQNATHY 151
+PS L PSC T V+ A + H+ A I L G W + +P C+E +N TH+
Sbjct: 185 QPSVL--PSCGGG-ETNVERAAKREAHVLARIAELRKNGLWSNSRLPKCVEPERNKTHW 240
>AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical
protein Y37D8A.26 protein.
Length = 88
Score = 30.3 bits (65), Expect = 0.71
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 101 CPSCNAVIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNCHAYIG 160
C +C + T+ + + I CL PC + + + H CPNC+ +G
Sbjct: 27 CTNCQETVTTKTEQ-VFGMLNFALFITCLF--LPCFIVCFWCRCFMDVHHRCPNCNKSLG 83
>AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical
protein C30F12.4 protein.
Length = 246
Score = 30.3 bits (65), Expect = 0.71
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 79 APQQFVTVVQARPMGPEPS----SLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGCWP 134
+P + V Q+ +G P +L CP C I+ R Q D K L L +C C P
Sbjct: 149 SPAITLCVNQSPQIGGSPGGGVGALVCPKCRKGIIMRKQ-DRLRKKILMCLAVC---CCP 204
Query: 135 CACIPYCMESCQNATHYCPNC 155
C + C N C C
Sbjct: 205 LTCCLPLICICCNYVDACGAC 225
>Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical
protein T02C1.1 protein.
Length = 160
Score = 29.9 bits (64), Expect = 0.94
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 128 CLIGCWPCACIPYCMESCQNATHYCPNCHAYIG 160
C+I C C +C+ES N CP C A+ G
Sbjct: 19 CIIECGHSYC-RFCIESHLNINEKCPLCRAHTG 50
>Z81579-5|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 128 CLIGCWPCACIPYCMESCQNATHYCPNC 155
C GC C C P C C+ C C
Sbjct: 80 CGCGCGCCCCRPRCCCCCRRCCTCCRTC 107
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 88 QARPMGPEPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQ 146
Q P +PS+ C C + V A+ + + +IL C P C +SCQ
Sbjct: 308 QCTPQCQQPSAPQCQQCQSACQAPVATTAAPQ--VVTIILEASVSQSAQCEPQCQQSCQ 364
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 103 SCNA--VIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQN 147
SCN VIV + Q + ++ + C C P C ++CQN
Sbjct: 291 SCNQQQVIVLQQQDNCQNQCQSSCMNTCQSSATVLQCQPICQQTCQN 337
>AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 4 protein.
Length = 339
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 81 QQFVTVVQAR--PMGPEPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGCWPCACI 138
QQF V Q + P +PS+ C C + + V + + +IL C
Sbjct: 212 QQFAPVCQQQCAPQCQQPSAPQCQQCQSACQSPVVAPVVAP-QIVTVILEASVSQSAQCE 270
Query: 139 PYCMESCQ 146
P C +SCQ
Sbjct: 271 PECQQSCQ 278
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 88 QARPMGPEPSSLTCPSCNAVIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQ 146
Q P +PS+ C C + V A+ + +IL C P C +SCQ
Sbjct: 308 QCTPQCQQPSAPQCQQCQSACQAPVATTAAPQA--VTIILEASVSQSAQCEPQCQQSCQ 364
>Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical
protein T07C4.11 protein.
Length = 367
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 133 WPC----ACIPYCMESCQNATHYCPNCHAYI 159
W C +C P+ + C +T +C C A+I
Sbjct: 325 WQCISSPSCHPHILSICSCSTTFCSKCSAFI 355
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 27.1 bits (57), Expect = 6.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 137 CIPYCMESCQNATHYCPN 154
C P C +SCQN + P+
Sbjct: 82 CAPACQQSCQNQCQFAPS 99
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 27.1 bits (57), Expect = 6.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 137 CIPYCMESCQNATHYCPN 154
C P C +SCQN + P+
Sbjct: 83 CAPACQQSCQNQCQFAPS 100
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.326 0.135 0.455
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,576,363
Number of Sequences: 27539
Number of extensions: 119999
Number of successful extensions: 508
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 53
length of query: 164
length of database: 12,573,161
effective HSP length: 76
effective length of query: 88
effective length of database: 10,480,197
effective search space: 922257336
effective search space used: 922257336
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)
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