GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000884-TA|BGIBMGA000884-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor, IPR007087|Zinc finger, C2H2-type
         (164 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01350.1 68417.m00175 DC1 domain-containing protein contains ...    28   2.7  
At1g32190.1 68414.m03959 expressed protein                             28   2.7  
At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger) fa...    28   3.6  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    27   6.2  
At4g37210.2 68417.m05267 tetratricopeptide repeat (TPR)-containi...    27   8.3  
At4g37210.1 68417.m05268 tetratricopeptide repeat (TPR)-containi...    27   8.3  

>At4g01350.1 68417.m00175 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 119 KTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNC 155
           KTH   LIL      PC C   C + C+ A + CP C
Sbjct: 235 KTHKHPLILFPRRI-PCIC-DICGKKCEFAVYVCPQC 269


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 129 LIGCWPCACIPYCMESCQNATHYCPNC 155
           L GC+ C   P C+ SC   T  C +C
Sbjct: 336 LKGCFSCCKKPSCVSSCCCPTFKCSSC 362


>At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 306

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 95  EPSSLTCPSCNAVIVTRVQHDASSKTHLF 123
           + S L CP C    + R+ HD+SS ++LF
Sbjct: 40  DSSPLLCPQCRVDFLERMDHDSSS-SNLF 67


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 141 CMESCQNATHYCPNCHAYIGTY 162
           C   C N ++ CP C   IG Y
Sbjct: 77  CSSCCTNVSNKCPYCSLAIGNY 98


>At4g37210.2 68417.m05267 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q02508 Protein HGV2
           Halocynthia roretzi; contains Pfam profile PF00515 TPR
           Domain
          Length = 377

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 106 AVIVTRVQHDASSKTHL-FALILCL-IGCWPCACIPYCMES 144
           +++   V+ D+     L F + +CL  GC P   IPYC ++
Sbjct: 268 SILERLVEPDSRRTAELNFRICICLETGCQPKEAIPYCQKA 308


>At4g37210.1 68417.m05268 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q02508 Protein HGV2
           Halocynthia roretzi; contains Pfam profile PF00515 TPR
           Domain
          Length = 492

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 106 AVIVTRVQHDASSKTHL-FALILCL-IGCWPCACIPYCMES 144
           +++   V+ D+     L F + +CL  GC P   IPYC ++
Sbjct: 268 SILERLVEPDSRRTAELNFRICICLETGCQPKEAIPYCQKA 308


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.135    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,869
Number of Sequences: 28952
Number of extensions: 101680
Number of successful extensions: 372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 7
length of query: 164
length of database: 12,070,560
effective HSP length: 76
effective length of query: 88
effective length of database: 9,870,208
effective search space: 868578304
effective search space used: 868578304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)