Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000883-TA|BGIBMGA000883-PA|IPR006629|LPS-induced tumor
necrosis factor alpha factor
         (153 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   3.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   3.5  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    20   8.2  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    20   8.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   8.2  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)

Query: 88  YTCPSCNTAIVTRVERVSTTKTHL 111
           + C  C+   +T++E+ + +K H+
Sbjct: 202 FKCKQCDFVAITKLEQWNHSKVHI 225


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 1/16 (6%)

Query: 43  PPHQNPPPYVTQPQPG 58
           PPHQ  PP   QP  G
Sbjct: 203 PPHQQ-PPIQQQPNQG 217


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 1/16 (6%)

Query: 43  PPHQNPPPYVTQPQPG 58
           PPHQ  PP   QP  G
Sbjct: 205 PPHQQ-PPIQQQPNQG 219


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)

Query: 130 CTNSCQNAEHY 140
           CTNSC N   Y
Sbjct: 321 CTNSCMNPVVY 331


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)

Query: 130 CTNSCQNAEHY 140
           CTNSC N   Y
Sbjct: 321 CTNSCMNPVVY 331


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 88  YTCPSCNTAIVTRVERVSTTKTH 110
           + CP CN   +         KTH
Sbjct: 375 FACPICNKRFMRSDHLAKHVKTH 397


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.137    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,482
Number of Sequences: 317
Number of extensions: 1440
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 153
length of database: 114,650
effective HSP length: 52
effective length of query: 101
effective length of database: 98,166
effective search space:  9914766
effective search space used:  9914766
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)